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High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging

BACKGROUND: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer’s preferences. These parameters are however still laborious and expensive to measur...

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Autores principales: Makanza, R., Zaman-Allah, M., Cairns, J. E., Eyre, J., Burgueño, J., Pacheco, Ángela, Diepenbrock, C., Magorokosho, C., Tarekegne, A., Olsen, M., Prasanna, B. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003192/
https://www.ncbi.nlm.nih.gov/pubmed/29946344
http://dx.doi.org/10.1186/s13007-018-0317-4
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author Makanza, R.
Zaman-Allah, M.
Cairns, J. E.
Eyre, J.
Burgueño, J.
Pacheco, Ángela
Diepenbrock, C.
Magorokosho, C.
Tarekegne, A.
Olsen, M.
Prasanna, B. M.
author_facet Makanza, R.
Zaman-Allah, M.
Cairns, J. E.
Eyre, J.
Burgueño, J.
Pacheco, Ángela
Diepenbrock, C.
Magorokosho, C.
Tarekegne, A.
Olsen, M.
Prasanna, B. M.
author_sort Makanza, R.
collection PubMed
description BACKGROUND: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer’s preferences. These parameters are however still laborious and expensive to measure. RESULTS: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. CONCLUSION: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants.
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spelling pubmed-60031922018-06-26 High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging Makanza, R. Zaman-Allah, M. Cairns, J. E. Eyre, J. Burgueño, J. Pacheco, Ángela Diepenbrock, C. Magorokosho, C. Tarekegne, A. Olsen, M. Prasanna, B. M. Plant Methods Methodology BACKGROUND: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer’s preferences. These parameters are however still laborious and expensive to measure. RESULTS: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. CONCLUSION: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants. BioMed Central 2018-06-15 /pmc/articles/PMC6003192/ /pubmed/29946344 http://dx.doi.org/10.1186/s13007-018-0317-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Makanza, R.
Zaman-Allah, M.
Cairns, J. E.
Eyre, J.
Burgueño, J.
Pacheco, Ángela
Diepenbrock, C.
Magorokosho, C.
Tarekegne, A.
Olsen, M.
Prasanna, B. M.
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_full High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_fullStr High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_full_unstemmed High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_short High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_sort high-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003192/
https://www.ncbi.nlm.nih.gov/pubmed/29946344
http://dx.doi.org/10.1186/s13007-018-0317-4
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