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Molecular dynamics simulations of liquid silica crystallization
Silica is one of the most abundant minerals on Earth and is widely used in many fields. Investigating the crystallization of liquid silica by atomic simulations is of great importance to understand the crystallization mechanism; however, the high crystallization barrier and the tendency of silica to...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003482/ https://www.ncbi.nlm.nih.gov/pubmed/29735667 http://dx.doi.org/10.1073/pnas.1803919115 |
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author | Niu, Haiyang Piaggi, Pablo M. Invernizzi, Michele Parrinello, Michele |
author_facet | Niu, Haiyang Piaggi, Pablo M. Invernizzi, Michele Parrinello, Michele |
author_sort | Niu, Haiyang |
collection | PubMed |
description | Silica is one of the most abundant minerals on Earth and is widely used in many fields. Investigating the crystallization of liquid silica by atomic simulations is of great importance to understand the crystallization mechanism; however, the high crystallization barrier and the tendency of silica to form glasses make such simulations very challenging. Here we have studied liquid silica crystallization to [Formula: see text]-cristobalite with metadynamics, using X-ray diffraction (XRD) peak intensities as collective variables. The frequent transitions between solid and liquid of the biased runs demonstrate the highly successful use of the XRD peak intensities as collective variables, which leads to the convergence of the free-energy surface. By calculating the difference in free energy, we have estimated the melting temperature of [Formula: see text]-cristobalite, which is in good agreement with the literature. The nucleation mechanism during the crystallization of liquid silica can be described by classical nucleation theory. |
format | Online Article Text |
id | pubmed-6003482 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-60034822018-06-18 Molecular dynamics simulations of liquid silica crystallization Niu, Haiyang Piaggi, Pablo M. Invernizzi, Michele Parrinello, Michele Proc Natl Acad Sci U S A Physical Sciences Silica is one of the most abundant minerals on Earth and is widely used in many fields. Investigating the crystallization of liquid silica by atomic simulations is of great importance to understand the crystallization mechanism; however, the high crystallization barrier and the tendency of silica to form glasses make such simulations very challenging. Here we have studied liquid silica crystallization to [Formula: see text]-cristobalite with metadynamics, using X-ray diffraction (XRD) peak intensities as collective variables. The frequent transitions between solid and liquid of the biased runs demonstrate the highly successful use of the XRD peak intensities as collective variables, which leads to the convergence of the free-energy surface. By calculating the difference in free energy, we have estimated the melting temperature of [Formula: see text]-cristobalite, which is in good agreement with the literature. The nucleation mechanism during the crystallization of liquid silica can be described by classical nucleation theory. National Academy of Sciences 2018-05-22 2018-05-07 /pmc/articles/PMC6003482/ /pubmed/29735667 http://dx.doi.org/10.1073/pnas.1803919115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Niu, Haiyang Piaggi, Pablo M. Invernizzi, Michele Parrinello, Michele Molecular dynamics simulations of liquid silica crystallization |
title | Molecular dynamics simulations of liquid silica crystallization |
title_full | Molecular dynamics simulations of liquid silica crystallization |
title_fullStr | Molecular dynamics simulations of liquid silica crystallization |
title_full_unstemmed | Molecular dynamics simulations of liquid silica crystallization |
title_short | Molecular dynamics simulations of liquid silica crystallization |
title_sort | molecular dynamics simulations of liquid silica crystallization |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003482/ https://www.ncbi.nlm.nih.gov/pubmed/29735667 http://dx.doi.org/10.1073/pnas.1803919115 |
work_keys_str_mv | AT niuhaiyang moleculardynamicssimulationsofliquidsilicacrystallization AT piaggipablom moleculardynamicssimulationsofliquidsilicacrystallization AT invernizzimichele moleculardynamicssimulationsofliquidsilicacrystallization AT parrinellomichele moleculardynamicssimulationsofliquidsilicacrystallization |