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A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a nove...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005467/ https://www.ncbi.nlm.nih.gov/pubmed/29912928 http://dx.doi.org/10.1371/journal.pone.0199123 |
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author | Stukel, Michael R. Décima, Moira Kelly, Thomas B. |
author_facet | Stukel, Michael R. Décima, Moira Kelly, Thomas B. |
author_sort | Stukel, Michael R. |
collection | PubMed |
description | Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a novel approach for incorporating δ(15)N isotopic data into existing Markov Chain Monte Carlo (MCMC) random walk methods for solving linear inverse ecosystem models. We test the ability of this approach to recover food web indices (nitrate uptake, nitrogen fixation, zooplankton trophic level, and secondary production) derived from forward models simulating the planktonic ecosystems of the California Current and Amazon River Plume. We show that the MCMC with δ(15)N approach typically does a better job of recovering ecosystem structure than the standard MCMC or L(2) minimum norm (L2MN) approaches, and also outperforms an L2MN with δ(15)N approach. Furthermore, we find that the MCMC with δ(15)N approach is robust to the removal of input equations and hence is well suited to typical pelagic ecosystem studies for which the system is usually vastly under-constrained. Our approach is easily extendable for use with δ(13)C isotopic measurements or variable carbon:nitrogen stoichiometry. |
format | Online Article Text |
id | pubmed-6005467 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60054672018-06-25 A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling Stukel, Michael R. Décima, Moira Kelly, Thomas B. PLoS One Research Article Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a novel approach for incorporating δ(15)N isotopic data into existing Markov Chain Monte Carlo (MCMC) random walk methods for solving linear inverse ecosystem models. We test the ability of this approach to recover food web indices (nitrate uptake, nitrogen fixation, zooplankton trophic level, and secondary production) derived from forward models simulating the planktonic ecosystems of the California Current and Amazon River Plume. We show that the MCMC with δ(15)N approach typically does a better job of recovering ecosystem structure than the standard MCMC or L(2) minimum norm (L2MN) approaches, and also outperforms an L2MN with δ(15)N approach. Furthermore, we find that the MCMC with δ(15)N approach is robust to the removal of input equations and hence is well suited to typical pelagic ecosystem studies for which the system is usually vastly under-constrained. Our approach is easily extendable for use with δ(13)C isotopic measurements or variable carbon:nitrogen stoichiometry. Public Library of Science 2018-06-18 /pmc/articles/PMC6005467/ /pubmed/29912928 http://dx.doi.org/10.1371/journal.pone.0199123 Text en © 2018 Stukel et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Stukel, Michael R. Décima, Moira Kelly, Thomas B. A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title | A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title_full | A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title_fullStr | A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title_full_unstemmed | A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title_short | A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling |
title_sort | new approach for incorporating (15)n isotopic data into linear inverse ecosystem models with markov chain monte carlo sampling |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005467/ https://www.ncbi.nlm.nih.gov/pubmed/29912928 http://dx.doi.org/10.1371/journal.pone.0199123 |
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