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A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling

Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a nove...

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Autores principales: Stukel, Michael R., Décima, Moira, Kelly, Thomas B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005467/
https://www.ncbi.nlm.nih.gov/pubmed/29912928
http://dx.doi.org/10.1371/journal.pone.0199123
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author Stukel, Michael R.
Décima, Moira
Kelly, Thomas B.
author_facet Stukel, Michael R.
Décima, Moira
Kelly, Thomas B.
author_sort Stukel, Michael R.
collection PubMed
description Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a novel approach for incorporating δ(15)N isotopic data into existing Markov Chain Monte Carlo (MCMC) random walk methods for solving linear inverse ecosystem models. We test the ability of this approach to recover food web indices (nitrate uptake, nitrogen fixation, zooplankton trophic level, and secondary production) derived from forward models simulating the planktonic ecosystems of the California Current and Amazon River Plume. We show that the MCMC with δ(15)N approach typically does a better job of recovering ecosystem structure than the standard MCMC or L(2) minimum norm (L2MN) approaches, and also outperforms an L2MN with δ(15)N approach. Furthermore, we find that the MCMC with δ(15)N approach is robust to the removal of input equations and hence is well suited to typical pelagic ecosystem studies for which the system is usually vastly under-constrained. Our approach is easily extendable for use with δ(13)C isotopic measurements or variable carbon:nitrogen stoichiometry.
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spelling pubmed-60054672018-06-25 A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling Stukel, Michael R. Décima, Moira Kelly, Thomas B. PLoS One Research Article Oceanographic field programs often use δ(15)N biogeochemical measurements and in situ rate measurements to investigate nitrogen cycling and planktonic ecosystem structure. However, integrative modeling approaches capable of synthesizing these distinct measurement types are lacking. We develop a novel approach for incorporating δ(15)N isotopic data into existing Markov Chain Monte Carlo (MCMC) random walk methods for solving linear inverse ecosystem models. We test the ability of this approach to recover food web indices (nitrate uptake, nitrogen fixation, zooplankton trophic level, and secondary production) derived from forward models simulating the planktonic ecosystems of the California Current and Amazon River Plume. We show that the MCMC with δ(15)N approach typically does a better job of recovering ecosystem structure than the standard MCMC or L(2) minimum norm (L2MN) approaches, and also outperforms an L2MN with δ(15)N approach. Furthermore, we find that the MCMC with δ(15)N approach is robust to the removal of input equations and hence is well suited to typical pelagic ecosystem studies for which the system is usually vastly under-constrained. Our approach is easily extendable for use with δ(13)C isotopic measurements or variable carbon:nitrogen stoichiometry. Public Library of Science 2018-06-18 /pmc/articles/PMC6005467/ /pubmed/29912928 http://dx.doi.org/10.1371/journal.pone.0199123 Text en © 2018 Stukel et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Stukel, Michael R.
Décima, Moira
Kelly, Thomas B.
A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title_full A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title_fullStr A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title_full_unstemmed A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title_short A new approach for incorporating (15)N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
title_sort new approach for incorporating (15)n isotopic data into linear inverse ecosystem models with markov chain monte carlo sampling
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005467/
https://www.ncbi.nlm.nih.gov/pubmed/29912928
http://dx.doi.org/10.1371/journal.pone.0199123
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