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Simulating polaron biophysics with Rydberg atoms
Transport of excitations along proteins can be formulated in a quantum physics context, based on the periodicity and vibrational modes of the structures. Numerically exact solutions of the corresponding equations are very challenging to obtain on classical computers. Approximate solutions based on t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006159/ https://www.ncbi.nlm.nih.gov/pubmed/29915263 http://dx.doi.org/10.1038/s41598-018-27232-4 |
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author | Płodzień, Marcin Sowiński, Tomasz Kokkelmans, Servaas |
author_facet | Płodzień, Marcin Sowiński, Tomasz Kokkelmans, Servaas |
author_sort | Płodzień, Marcin |
collection | PubMed |
description | Transport of excitations along proteins can be formulated in a quantum physics context, based on the periodicity and vibrational modes of the structures. Numerically exact solutions of the corresponding equations are very challenging to obtain on classical computers. Approximate solutions based on the Davydov ansatz have demonstrated the possibility of stabilized solitonic excitations along the protein, however, experimentally these solutions have never been directly observed. Here we propose an alternative study of biophysical transport phenomena based on a quantum simulator composed of a chain of ultracold dressed Rydberg atoms, which allows for a direct observation of the Davydov phenomena. We show that there is an experimentally accessible range of parameters where the system directly mimics the Davydov equations and their solutions. Moreover, we show that such a quantum simulator has access to the regime in between the small and large polaron regimes, which cannot be described perturbatively. |
format | Online Article Text |
id | pubmed-6006159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-60061592018-06-26 Simulating polaron biophysics with Rydberg atoms Płodzień, Marcin Sowiński, Tomasz Kokkelmans, Servaas Sci Rep Article Transport of excitations along proteins can be formulated in a quantum physics context, based on the periodicity and vibrational modes of the structures. Numerically exact solutions of the corresponding equations are very challenging to obtain on classical computers. Approximate solutions based on the Davydov ansatz have demonstrated the possibility of stabilized solitonic excitations along the protein, however, experimentally these solutions have never been directly observed. Here we propose an alternative study of biophysical transport phenomena based on a quantum simulator composed of a chain of ultracold dressed Rydberg atoms, which allows for a direct observation of the Davydov phenomena. We show that there is an experimentally accessible range of parameters where the system directly mimics the Davydov equations and their solutions. Moreover, we show that such a quantum simulator has access to the regime in between the small and large polaron regimes, which cannot be described perturbatively. Nature Publishing Group UK 2018-06-18 /pmc/articles/PMC6006159/ /pubmed/29915263 http://dx.doi.org/10.1038/s41598-018-27232-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Płodzień, Marcin Sowiński, Tomasz Kokkelmans, Servaas Simulating polaron biophysics with Rydberg atoms |
title | Simulating polaron biophysics with Rydberg atoms |
title_full | Simulating polaron biophysics with Rydberg atoms |
title_fullStr | Simulating polaron biophysics with Rydberg atoms |
title_full_unstemmed | Simulating polaron biophysics with Rydberg atoms |
title_short | Simulating polaron biophysics with Rydberg atoms |
title_sort | simulating polaron biophysics with rydberg atoms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006159/ https://www.ncbi.nlm.nih.gov/pubmed/29915263 http://dx.doi.org/10.1038/s41598-018-27232-4 |
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