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The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)

The complete mitochondrial genome (mitogenome) of Ugyops sp. (Hemiptera: Delphacidae) was sequenced, making it the first determined mitogenome from the subfamily Asiracinae, the basal clade of the family Delphacidae. The mitogenome was 15,259 bp in length with A + T content of 77.65% and contained 1...

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Autores principales: Yu, Fang, Liang, Ai-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007673/
https://www.ncbi.nlm.nih.gov/pubmed/29924333
http://dx.doi.org/10.1093/jisesa/iey063
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author Yu, Fang
Liang, Ai-Ping
author_facet Yu, Fang
Liang, Ai-Ping
author_sort Yu, Fang
collection PubMed
description The complete mitochondrial genome (mitogenome) of Ugyops sp. (Hemiptera: Delphacidae) was sequenced, making it the first determined mitogenome from the subfamily Asiracinae, the basal clade of the family Delphacidae. The mitogenome was 15,259 bp in length with A + T content of 77.65% and contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a control region. The gene order was identical with that of the ancestral insect. The nucleotide composition analysis indicated that the whole mitogenome was strongly A-skewed (0.288) and highly C-skewed (−0.270). For PCGs on the J-strand, the AT skew was positive, and the GC skew was negative. All PCGs started with canonical ATN codons, except for cox1 and nad5, which used CTG and GTG as start codon, respectively. All tRNAs could fold into typical cloverleaf secondary structures, with the exception of trnS1 (AGN), in which the dihydrouridine arm was reduced to a simple loop. The control region included a poly-T stretch downstream of the small rRNA gene (rrnS), a subregion of higher A + T content and tandemly repeated sequence near trnI. The mitogenome of Ugyops sp. could be very helpful in exploring the diversity and evolution of mitogenomes in Delphacidae.
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spelling pubmed-60076732018-06-25 The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae) Yu, Fang Liang, Ai-Ping J Insect Sci Research The complete mitochondrial genome (mitogenome) of Ugyops sp. (Hemiptera: Delphacidae) was sequenced, making it the first determined mitogenome from the subfamily Asiracinae, the basal clade of the family Delphacidae. The mitogenome was 15,259 bp in length with A + T content of 77.65% and contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a control region. The gene order was identical with that of the ancestral insect. The nucleotide composition analysis indicated that the whole mitogenome was strongly A-skewed (0.288) and highly C-skewed (−0.270). For PCGs on the J-strand, the AT skew was positive, and the GC skew was negative. All PCGs started with canonical ATN codons, except for cox1 and nad5, which used CTG and GTG as start codon, respectively. All tRNAs could fold into typical cloverleaf secondary structures, with the exception of trnS1 (AGN), in which the dihydrouridine arm was reduced to a simple loop. The control region included a poly-T stretch downstream of the small rRNA gene (rrnS), a subregion of higher A + T content and tandemly repeated sequence near trnI. The mitogenome of Ugyops sp. could be very helpful in exploring the diversity and evolution of mitogenomes in Delphacidae. Oxford University Press 2018-06-19 /pmc/articles/PMC6007673/ /pubmed/29924333 http://dx.doi.org/10.1093/jisesa/iey063 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Entomological Society of America. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research
Yu, Fang
Liang, Ai-Ping
The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title_full The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title_fullStr The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title_full_unstemmed The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title_short The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae)
title_sort complete mitochondrial genome of ugyops sp. (hemiptera: delphacidae)
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007673/
https://www.ncbi.nlm.nih.gov/pubmed/29924333
http://dx.doi.org/10.1093/jisesa/iey063
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