Cargando…

An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan

Identifying the abnormally high-risk regions in a spatiotemporal space that contains an unexpected disease count is helpful to conduct surveillance and implement control strategies. The EigenSpot algorithm has been recently proposed for detecting space-time disease clusters of arbitrary shapes with...

Descripción completa

Detalles Bibliográficos
Autores principales: Ullah, Sami, Daud, Hanita, Dass, Sarat C., Fanaee-T, Hadi, Khalil, Alamgir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007829/
https://www.ncbi.nlm.nih.gov/pubmed/29920540
http://dx.doi.org/10.1371/journal.pone.0199176
_version_ 1783333102270021632
author Ullah, Sami
Daud, Hanita
Dass, Sarat C.
Fanaee-T, Hadi
Khalil, Alamgir
author_facet Ullah, Sami
Daud, Hanita
Dass, Sarat C.
Fanaee-T, Hadi
Khalil, Alamgir
author_sort Ullah, Sami
collection PubMed
description Identifying the abnormally high-risk regions in a spatiotemporal space that contains an unexpected disease count is helpful to conduct surveillance and implement control strategies. The EigenSpot algorithm has been recently proposed for detecting space-time disease clusters of arbitrary shapes with no restriction on the distribution and quality of the data, and has shown some promising advantages over the state-of-the-art methods. However, the main problem with the EigenSpot method is that it cannot be adapted to detect more than one spatiotemporal hotspot. This is an important limitation, since, in reality, we may have multiple hotspots, sometimes at the same level of importance. We propose an extension of the EigenSpot algorithm, called Multi-EigenSpot that is able to handle multiple hotspots by iteratively removing previously detected hotspots and re-running the algorithm until no more hotspots are found. In addition, a visualization tool (heatmap) has been linked to the proposed algorithm to visualize multiple clusters with different colors. We evaluated the proposed method using the monthly data on measles cases in Khyber-Pakhtunkhwa, Pakistan (Jan 2016- Dec 2016), and the efficiency was compared with the state-of-the-art methods: EigenSpot and Space-time scan statistic (SaTScan). The results showed the effectiveness of the proposed method for detecting multiple clusters in a spatiotemporal space.
format Online
Article
Text
id pubmed-6007829
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-60078292018-06-25 An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan Ullah, Sami Daud, Hanita Dass, Sarat C. Fanaee-T, Hadi Khalil, Alamgir PLoS One Research Article Identifying the abnormally high-risk regions in a spatiotemporal space that contains an unexpected disease count is helpful to conduct surveillance and implement control strategies. The EigenSpot algorithm has been recently proposed for detecting space-time disease clusters of arbitrary shapes with no restriction on the distribution and quality of the data, and has shown some promising advantages over the state-of-the-art methods. However, the main problem with the EigenSpot method is that it cannot be adapted to detect more than one spatiotemporal hotspot. This is an important limitation, since, in reality, we may have multiple hotspots, sometimes at the same level of importance. We propose an extension of the EigenSpot algorithm, called Multi-EigenSpot that is able to handle multiple hotspots by iteratively removing previously detected hotspots and re-running the algorithm until no more hotspots are found. In addition, a visualization tool (heatmap) has been linked to the proposed algorithm to visualize multiple clusters with different colors. We evaluated the proposed method using the monthly data on measles cases in Khyber-Pakhtunkhwa, Pakistan (Jan 2016- Dec 2016), and the efficiency was compared with the state-of-the-art methods: EigenSpot and Space-time scan statistic (SaTScan). The results showed the effectiveness of the proposed method for detecting multiple clusters in a spatiotemporal space. Public Library of Science 2018-06-19 /pmc/articles/PMC6007829/ /pubmed/29920540 http://dx.doi.org/10.1371/journal.pone.0199176 Text en © 2018 Ullah et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ullah, Sami
Daud, Hanita
Dass, Sarat C.
Fanaee-T, Hadi
Khalil, Alamgir
An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title_full An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title_fullStr An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title_full_unstemmed An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title_short An Eigenspace approach for detecting multiple space-time disease clusters: Application to measles hotspots detection in Khyber-Pakhtunkhwa, Pakistan
title_sort eigenspace approach for detecting multiple space-time disease clusters: application to measles hotspots detection in khyber-pakhtunkhwa, pakistan
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007829/
https://www.ncbi.nlm.nih.gov/pubmed/29920540
http://dx.doi.org/10.1371/journal.pone.0199176
work_keys_str_mv AT ullahsami aneigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT daudhanita aneigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT dasssaratc aneigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT fanaeethadi aneigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT khalilalamgir aneigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT ullahsami eigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT daudhanita eigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT dasssaratc eigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT fanaeethadi eigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan
AT khalilalamgir eigenspaceapproachfordetectingmultiplespacetimediseaseclustersapplicationtomeasleshotspotsdetectioninkhyberpakhtunkhwapakistan