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Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers
Alu insertions, INDELs, and SNPs in the X chromosome can be useful not only for revealing relationships among populations but also for identification purposes. We present data of 10 Alu insertions, 5 INDELs, and 15 SNPs of X-chromosome from three Argentinian north-east cities in order to gain insigh...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008373/ https://www.ncbi.nlm.nih.gov/pubmed/29951085 http://dx.doi.org/10.3389/fgene.2018.00208 |
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author | Di Santo Meztler, Gabriela P. del Palacio, Santiago Esteban, María E. Armoa, Isaías Argüelles, Carina F. Catanesi, Cecilia I. |
author_facet | Di Santo Meztler, Gabriela P. del Palacio, Santiago Esteban, María E. Armoa, Isaías Argüelles, Carina F. Catanesi, Cecilia I. |
author_sort | Di Santo Meztler, Gabriela P. |
collection | PubMed |
description | Alu insertions, INDELs, and SNPs in the X chromosome can be useful not only for revealing relationships among populations but also for identification purposes. We present data of 10 Alu insertions, 5 INDELs, and 15 SNPs of X-chromosome from three Argentinian north-east cities in order to gain insight into the genetic diversity of the X chromosome within this region of the country. Data from 198 unrelated individuals belonging to Posadas, Corrientes, and Eldorado cities were genotyped for Ya5DP62, Yb8DP49, Ya5DP3, Ya5NBC37, Ya5DP77, Ya5NBC491, Ya5DP4, Ya5DP13, Yb8NBC634, and Yb8NBC102 Alu insertions, for MID193, MID1705, MID3754, MID3756 and MID1540 Indels and for rs6639398, rs5986751, rs5964206, rs9781645, rs2209420, rs1299087, rs318173, rs933315, rs1991961, rs4825889, rs1781116, rs1937193, rs1781104, rs149910, and rs652 SNPs. No deviations from Hardy-Weinberg equilibrium were observed for Posadas and Corrientes. However, Eldorado showed significant values, and it was found to have an internal substructuring with two groups of different origin, one showing higher similarity with European countries, and the other with more similarities to Posadas and Corrientes. F(st) pairwise genetic distances emerged for some markers among the studied populations and also between our data and those from other countries and continents. Of particular interest, Alu insertions demonstrated the most differences, and could be of use in ancestry studies for these populations, while INDELs and SNPs variation were informative for differentiation within the country. |
format | Online Article Text |
id | pubmed-6008373 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60083732018-06-27 Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers Di Santo Meztler, Gabriela P. del Palacio, Santiago Esteban, María E. Armoa, Isaías Argüelles, Carina F. Catanesi, Cecilia I. Front Genet Genetics Alu insertions, INDELs, and SNPs in the X chromosome can be useful not only for revealing relationships among populations but also for identification purposes. We present data of 10 Alu insertions, 5 INDELs, and 15 SNPs of X-chromosome from three Argentinian north-east cities in order to gain insight into the genetic diversity of the X chromosome within this region of the country. Data from 198 unrelated individuals belonging to Posadas, Corrientes, and Eldorado cities were genotyped for Ya5DP62, Yb8DP49, Ya5DP3, Ya5NBC37, Ya5DP77, Ya5NBC491, Ya5DP4, Ya5DP13, Yb8NBC634, and Yb8NBC102 Alu insertions, for MID193, MID1705, MID3754, MID3756 and MID1540 Indels and for rs6639398, rs5986751, rs5964206, rs9781645, rs2209420, rs1299087, rs318173, rs933315, rs1991961, rs4825889, rs1781116, rs1937193, rs1781104, rs149910, and rs652 SNPs. No deviations from Hardy-Weinberg equilibrium were observed for Posadas and Corrientes. However, Eldorado showed significant values, and it was found to have an internal substructuring with two groups of different origin, one showing higher similarity with European countries, and the other with more similarities to Posadas and Corrientes. F(st) pairwise genetic distances emerged for some markers among the studied populations and also between our data and those from other countries and continents. Of particular interest, Alu insertions demonstrated the most differences, and could be of use in ancestry studies for these populations, while INDELs and SNPs variation were informative for differentiation within the country. Frontiers Media S.A. 2018-06-13 /pmc/articles/PMC6008373/ /pubmed/29951085 http://dx.doi.org/10.3389/fgene.2018.00208 Text en Copyright © 2018 Di Santo Meztler, del Palacio, Esteban, Armoa, Argüelles and Catanesi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Di Santo Meztler, Gabriela P. del Palacio, Santiago Esteban, María E. Armoa, Isaías Argüelles, Carina F. Catanesi, Cecilia I. Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title | Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title_full | Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title_fullStr | Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title_full_unstemmed | Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title_short | Genetic Differentiation of North-East Argentina Populations Based on 30 Binary X Chromosome Markers |
title_sort | genetic differentiation of north-east argentina populations based on 30 binary x chromosome markers |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008373/ https://www.ncbi.nlm.nih.gov/pubmed/29951085 http://dx.doi.org/10.3389/fgene.2018.00208 |
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