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Role of conformational dynamics in the evolution of novel enzyme function
The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the p...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009289/ https://www.ncbi.nlm.nih.gov/pubmed/29780987 http://dx.doi.org/10.1039/c8cc02426j |
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author | Maria-Solano, Miguel A. Serrano-Hervás, Eila Romero-Rivera, Adrian Iglesias-Fernández, Javier Osuna, Sílvia |
author_facet | Maria-Solano, Miguel A. Serrano-Hervás, Eila Romero-Rivera, Adrian Iglesias-Fernández, Javier Osuna, Sílvia |
author_sort | Maria-Solano, Miguel A. |
collection | PubMed |
description | The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the pre-existing conformational states, thus strongly modifying the enzyme ability to accommodate alternative substrates, revert its enantiopreferences, and even increase the activity for some residual promiscuous reactions. In this feature article, we present an overview of the current experimental and computational strategies to explore the conformational free energy landscape of enzymes. We provide a series of recent publications that highlight the key role of conformational dynamics for the enzyme evolution towards new functions and substrates, and provide some perspectives on how conformational dynamism should be considered in future computational enzyme design protocols. |
format | Online Article Text |
id | pubmed-6009289 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-60092892018-07-13 Role of conformational dynamics in the evolution of novel enzyme function Maria-Solano, Miguel A. Serrano-Hervás, Eila Romero-Rivera, Adrian Iglesias-Fernández, Javier Osuna, Sílvia Chem Commun (Camb) Chemistry The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the pre-existing conformational states, thus strongly modifying the enzyme ability to accommodate alternative substrates, revert its enantiopreferences, and even increase the activity for some residual promiscuous reactions. In this feature article, we present an overview of the current experimental and computational strategies to explore the conformational free energy landscape of enzymes. We provide a series of recent publications that highlight the key role of conformational dynamics for the enzyme evolution towards new functions and substrates, and provide some perspectives on how conformational dynamism should be considered in future computational enzyme design protocols. Royal Society of Chemistry 2018-06-25 2018-05-14 /pmc/articles/PMC6009289/ /pubmed/29780987 http://dx.doi.org/10.1039/c8cc02426j Text en This journal is © The Royal Society of Chemistry 2018 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) |
spellingShingle | Chemistry Maria-Solano, Miguel A. Serrano-Hervás, Eila Romero-Rivera, Adrian Iglesias-Fernández, Javier Osuna, Sílvia Role of conformational dynamics in the evolution of novel enzyme function |
title | Role of conformational dynamics in the evolution of novel enzyme function |
title_full | Role of conformational dynamics in the evolution of novel enzyme function |
title_fullStr | Role of conformational dynamics in the evolution of novel enzyme function |
title_full_unstemmed | Role of conformational dynamics in the evolution of novel enzyme function |
title_short | Role of conformational dynamics in the evolution of novel enzyme function |
title_sort | role of conformational dynamics in the evolution of novel enzyme function |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009289/ https://www.ncbi.nlm.nih.gov/pubmed/29780987 http://dx.doi.org/10.1039/c8cc02426j |
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