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Role of conformational dynamics in the evolution of novel enzyme function

The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the p...

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Autores principales: Maria-Solano, Miguel A., Serrano-Hervás, Eila, Romero-Rivera, Adrian, Iglesias-Fernández, Javier, Osuna, Sílvia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009289/
https://www.ncbi.nlm.nih.gov/pubmed/29780987
http://dx.doi.org/10.1039/c8cc02426j
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author Maria-Solano, Miguel A.
Serrano-Hervás, Eila
Romero-Rivera, Adrian
Iglesias-Fernández, Javier
Osuna, Sílvia
author_facet Maria-Solano, Miguel A.
Serrano-Hervás, Eila
Romero-Rivera, Adrian
Iglesias-Fernández, Javier
Osuna, Sílvia
author_sort Maria-Solano, Miguel A.
collection PubMed
description The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the pre-existing conformational states, thus strongly modifying the enzyme ability to accommodate alternative substrates, revert its enantiopreferences, and even increase the activity for some residual promiscuous reactions. In this feature article, we present an overview of the current experimental and computational strategies to explore the conformational free energy landscape of enzymes. We provide a series of recent publications that highlight the key role of conformational dynamics for the enzyme evolution towards new functions and substrates, and provide some perspectives on how conformational dynamism should be considered in future computational enzyme design protocols.
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spelling pubmed-60092892018-07-13 Role of conformational dynamics in the evolution of novel enzyme function Maria-Solano, Miguel A. Serrano-Hervás, Eila Romero-Rivera, Adrian Iglesias-Fernández, Javier Osuna, Sílvia Chem Commun (Camb) Chemistry The free energy landscape concept that describes enzymes as an ensemble of differently populated conformational sub-states in dynamic equilibrium is key for evaluating enzyme activity, enantioselectivity, and specificity. Mutations introduced in the enzyme sequence can alter the populations of the pre-existing conformational states, thus strongly modifying the enzyme ability to accommodate alternative substrates, revert its enantiopreferences, and even increase the activity for some residual promiscuous reactions. In this feature article, we present an overview of the current experimental and computational strategies to explore the conformational free energy landscape of enzymes. We provide a series of recent publications that highlight the key role of conformational dynamics for the enzyme evolution towards new functions and substrates, and provide some perspectives on how conformational dynamism should be considered in future computational enzyme design protocols. Royal Society of Chemistry 2018-06-25 2018-05-14 /pmc/articles/PMC6009289/ /pubmed/29780987 http://dx.doi.org/10.1039/c8cc02426j Text en This journal is © The Royal Society of Chemistry 2018 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0)
spellingShingle Chemistry
Maria-Solano, Miguel A.
Serrano-Hervás, Eila
Romero-Rivera, Adrian
Iglesias-Fernández, Javier
Osuna, Sílvia
Role of conformational dynamics in the evolution of novel enzyme function
title Role of conformational dynamics in the evolution of novel enzyme function
title_full Role of conformational dynamics in the evolution of novel enzyme function
title_fullStr Role of conformational dynamics in the evolution of novel enzyme function
title_full_unstemmed Role of conformational dynamics in the evolution of novel enzyme function
title_short Role of conformational dynamics in the evolution of novel enzyme function
title_sort role of conformational dynamics in the evolution of novel enzyme function
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009289/
https://www.ncbi.nlm.nih.gov/pubmed/29780987
http://dx.doi.org/10.1039/c8cc02426j
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