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Classification of crystallization outcomes using deep convolutional neural networks
The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010233/ https://www.ncbi.nlm.nih.gov/pubmed/29924841 http://dx.doi.org/10.1371/journal.pone.0198883 |
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author | Bruno, Andrew E. Charbonneau, Patrick Newman, Janet Snell, Edward H. So, David R. Vanhoucke, Vincent Watkins, Christopher J. Williams, Shawn Wilson, Julie |
author_facet | Bruno, Andrew E. Charbonneau, Patrick Newman, Janet Snell, Edward H. So, David R. Vanhoucke, Vincent Watkins, Christopher J. Williams, Shawn Wilson, Julie |
author_sort | Bruno, Andrew E. |
collection | PubMed |
description | The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications. |
format | Online Article Text |
id | pubmed-6010233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60102332018-07-06 Classification of crystallization outcomes using deep convolutional neural networks Bruno, Andrew E. Charbonneau, Patrick Newman, Janet Snell, Edward H. So, David R. Vanhoucke, Vincent Watkins, Christopher J. Williams, Shawn Wilson, Julie PLoS One Research Article The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications. Public Library of Science 2018-06-20 /pmc/articles/PMC6010233/ /pubmed/29924841 http://dx.doi.org/10.1371/journal.pone.0198883 Text en © 2018 Bruno et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bruno, Andrew E. Charbonneau, Patrick Newman, Janet Snell, Edward H. So, David R. Vanhoucke, Vincent Watkins, Christopher J. Williams, Shawn Wilson, Julie Classification of crystallization outcomes using deep convolutional neural networks |
title | Classification of crystallization outcomes using deep convolutional neural networks |
title_full | Classification of crystallization outcomes using deep convolutional neural networks |
title_fullStr | Classification of crystallization outcomes using deep convolutional neural networks |
title_full_unstemmed | Classification of crystallization outcomes using deep convolutional neural networks |
title_short | Classification of crystallization outcomes using deep convolutional neural networks |
title_sort | classification of crystallization outcomes using deep convolutional neural networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010233/ https://www.ncbi.nlm.nih.gov/pubmed/29924841 http://dx.doi.org/10.1371/journal.pone.0198883 |
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