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Classification of crystallization outcomes using deep convolutional neural networks

The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of...

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Autores principales: Bruno, Andrew E., Charbonneau, Patrick, Newman, Janet, Snell, Edward H., So, David R., Vanhoucke, Vincent, Watkins, Christopher J., Williams, Shawn, Wilson, Julie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010233/
https://www.ncbi.nlm.nih.gov/pubmed/29924841
http://dx.doi.org/10.1371/journal.pone.0198883
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author Bruno, Andrew E.
Charbonneau, Patrick
Newman, Janet
Snell, Edward H.
So, David R.
Vanhoucke, Vincent
Watkins, Christopher J.
Williams, Shawn
Wilson, Julie
author_facet Bruno, Andrew E.
Charbonneau, Patrick
Newman, Janet
Snell, Edward H.
So, David R.
Vanhoucke, Vincent
Watkins, Christopher J.
Williams, Shawn
Wilson, Julie
author_sort Bruno, Andrew E.
collection PubMed
description The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications.
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spelling pubmed-60102332018-07-06 Classification of crystallization outcomes using deep convolutional neural networks Bruno, Andrew E. Charbonneau, Patrick Newman, Janet Snell, Edward H. So, David R. Vanhoucke, Vincent Watkins, Christopher J. Williams, Shawn Wilson, Julie PLoS One Research Article The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications. Public Library of Science 2018-06-20 /pmc/articles/PMC6010233/ /pubmed/29924841 http://dx.doi.org/10.1371/journal.pone.0198883 Text en © 2018 Bruno et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bruno, Andrew E.
Charbonneau, Patrick
Newman, Janet
Snell, Edward H.
So, David R.
Vanhoucke, Vincent
Watkins, Christopher J.
Williams, Shawn
Wilson, Julie
Classification of crystallization outcomes using deep convolutional neural networks
title Classification of crystallization outcomes using deep convolutional neural networks
title_full Classification of crystallization outcomes using deep convolutional neural networks
title_fullStr Classification of crystallization outcomes using deep convolutional neural networks
title_full_unstemmed Classification of crystallization outcomes using deep convolutional neural networks
title_short Classification of crystallization outcomes using deep convolutional neural networks
title_sort classification of crystallization outcomes using deep convolutional neural networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010233/
https://www.ncbi.nlm.nih.gov/pubmed/29924841
http://dx.doi.org/10.1371/journal.pone.0198883
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