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When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data
Ecological studies are increasingly considering phylogenetic relationships among species. The phylogeny is used as a proxy or filter to improve statistical tests and retain evolutionary elements, such as niche conservation. We used the phylogenetic topology to improve the model for occurrence of Tri...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010749/ https://www.ncbi.nlm.nih.gov/pubmed/29938055 http://dx.doi.org/10.1002/ece3.4031 |
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author | Godoy, Bruno Spacek Camargos, Lucas Marques Lodi, Sara |
author_facet | Godoy, Bruno Spacek Camargos, Lucas Marques Lodi, Sara |
author_sort | Godoy, Bruno Spacek |
collection | PubMed |
description | Ecological studies are increasingly considering phylogenetic relationships among species. The phylogeny is used as a proxy or filter to improve statistical tests and retain evolutionary elements, such as niche conservation. We used the phylogenetic topology to improve the model for occurrence of Trichoptera genera in Cerrado (Brazilian Savanna) streams. We tested whether parameters generated by logistic models of occurrence, using phylogenetic signals, are better than models generated without phylogenetic information. We used a model with Bayesian updating to examine the influence of stream water pH and phylogenetic relationship among genera on the occurrence of Trichoptera genera. Then, we compared this model with the logistic model for each Trichoptera genus. The probability of occurrence of most genera increased with water pH, and the phylogeny‐based explicit logistic model improved the parameters estimated for observed genera. The inferred relationship between genera occurrence and stream pH improved, indicating that phylogeny adds relevant information when estimating ecological responses of organisms. Water with elevated acidity (low pH values) may be restrictive for the occurrence of Trichoptera larvae, especially if the regional streams exhibit neutral to alkaline water, as is observed in the Cerrado region. Using phylogeny‐based modeling to predict species occurrence is a prominent opportunity to extend our current statistical framework based on environmental conditions, as it enables a more precise estimation of ecological parameters. |
format | Online Article Text |
id | pubmed-6010749 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60107492018-06-22 When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data Godoy, Bruno Spacek Camargos, Lucas Marques Lodi, Sara Ecol Evol Original Research Ecological studies are increasingly considering phylogenetic relationships among species. The phylogeny is used as a proxy or filter to improve statistical tests and retain evolutionary elements, such as niche conservation. We used the phylogenetic topology to improve the model for occurrence of Trichoptera genera in Cerrado (Brazilian Savanna) streams. We tested whether parameters generated by logistic models of occurrence, using phylogenetic signals, are better than models generated without phylogenetic information. We used a model with Bayesian updating to examine the influence of stream water pH and phylogenetic relationship among genera on the occurrence of Trichoptera genera. Then, we compared this model with the logistic model for each Trichoptera genus. The probability of occurrence of most genera increased with water pH, and the phylogeny‐based explicit logistic model improved the parameters estimated for observed genera. The inferred relationship between genera occurrence and stream pH improved, indicating that phylogeny adds relevant information when estimating ecological responses of organisms. Water with elevated acidity (low pH values) may be restrictive for the occurrence of Trichoptera larvae, especially if the regional streams exhibit neutral to alkaline water, as is observed in the Cerrado region. Using phylogeny‐based modeling to predict species occurrence is a prominent opportunity to extend our current statistical framework based on environmental conditions, as it enables a more precise estimation of ecological parameters. John Wiley and Sons Inc. 2018-05-08 /pmc/articles/PMC6010749/ /pubmed/29938055 http://dx.doi.org/10.1002/ece3.4031 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Godoy, Bruno Spacek Camargos, Lucas Marques Lodi, Sara When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title | When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title_full | When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title_fullStr | When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title_full_unstemmed | When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title_short | When phylogeny and ecology meet: Modeling the occurrence of Trichoptera with environmental and phylogenetic data |
title_sort | when phylogeny and ecology meet: modeling the occurrence of trichoptera with environmental and phylogenetic data |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6010749/ https://www.ncbi.nlm.nih.gov/pubmed/29938055 http://dx.doi.org/10.1002/ece3.4031 |
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