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Using Approximate Bayesian Computation to infer sex ratios from acoustic data

Population sex ratios are of high ecological relevance, but are challenging to determine in species lacking conspicuous external cues indicating their sex. Acoustic sexing is an option if vocalizations differ between sexes, but is precluded by overlapping distributions of the values of male and fema...

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Autores principales: Lehnen, Lisa, Schorcht, Wigbert, Karst, Inken, Biedermann, Martin, Kerth, Gerald, Puechmaille, Sebastien J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013104/
https://www.ncbi.nlm.nih.gov/pubmed/29928036
http://dx.doi.org/10.1371/journal.pone.0199428
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author Lehnen, Lisa
Schorcht, Wigbert
Karst, Inken
Biedermann, Martin
Kerth, Gerald
Puechmaille, Sebastien J.
author_facet Lehnen, Lisa
Schorcht, Wigbert
Karst, Inken
Biedermann, Martin
Kerth, Gerald
Puechmaille, Sebastien J.
author_sort Lehnen, Lisa
collection PubMed
description Population sex ratios are of high ecological relevance, but are challenging to determine in species lacking conspicuous external cues indicating their sex. Acoustic sexing is an option if vocalizations differ between sexes, but is precluded by overlapping distributions of the values of male and female vocalizations in many species. A method allowing the inference of sex ratios despite such an overlap will therefore greatly increase the information extractable from acoustic data. To meet this demand, we developed a novel approach using Approximate Bayesian Computation (ABC) to infer the sex ratio of populations from acoustic data. Additionally, parameters characterizing the male and female distribution of acoustic values (mean and standard deviation) are inferred. This information is then used to probabilistically assign a sex to a single acoustic signal. We furthermore develop a simpler means of sex ratio estimation based on the exclusion of calls from the overlap zone. Applying our methods to simulated data demonstrates that sex ratio and acoustic parameter characteristics of males and females are reliably inferred by the ABC approach. Applying both the ABC and the exclusion method to empirical datasets (echolocation calls recorded in colonies of lesser horseshoe bats, Rhinolophus hipposideros) provides similar sex ratios as molecular sexing. Our methods aim to facilitate evidence-based conservation, and to benefit scientists investigating ecological or conservation questions related to sex- or group specific behaviour across a wide range of organisms emitting acoustic signals. The developed methodology is non-invasive, low-cost and time-efficient, thus allowing the study of many sites and individuals. We provide an R-script for the easy application of the method and discuss potential future extensions and fields of applications. The script can be easily adapted to account for numerous biological systems by adjusting the type and number of groups to be distinguished (e.g. age, social rank, cryptic species) and the acoustic parameters investigated.
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spelling pubmed-60131042018-07-06 Using Approximate Bayesian Computation to infer sex ratios from acoustic data Lehnen, Lisa Schorcht, Wigbert Karst, Inken Biedermann, Martin Kerth, Gerald Puechmaille, Sebastien J. PLoS One Research Article Population sex ratios are of high ecological relevance, but are challenging to determine in species lacking conspicuous external cues indicating their sex. Acoustic sexing is an option if vocalizations differ between sexes, but is precluded by overlapping distributions of the values of male and female vocalizations in many species. A method allowing the inference of sex ratios despite such an overlap will therefore greatly increase the information extractable from acoustic data. To meet this demand, we developed a novel approach using Approximate Bayesian Computation (ABC) to infer the sex ratio of populations from acoustic data. Additionally, parameters characterizing the male and female distribution of acoustic values (mean and standard deviation) are inferred. This information is then used to probabilistically assign a sex to a single acoustic signal. We furthermore develop a simpler means of sex ratio estimation based on the exclusion of calls from the overlap zone. Applying our methods to simulated data demonstrates that sex ratio and acoustic parameter characteristics of males and females are reliably inferred by the ABC approach. Applying both the ABC and the exclusion method to empirical datasets (echolocation calls recorded in colonies of lesser horseshoe bats, Rhinolophus hipposideros) provides similar sex ratios as molecular sexing. Our methods aim to facilitate evidence-based conservation, and to benefit scientists investigating ecological or conservation questions related to sex- or group specific behaviour across a wide range of organisms emitting acoustic signals. The developed methodology is non-invasive, low-cost and time-efficient, thus allowing the study of many sites and individuals. We provide an R-script for the easy application of the method and discuss potential future extensions and fields of applications. The script can be easily adapted to account for numerous biological systems by adjusting the type and number of groups to be distinguished (e.g. age, social rank, cryptic species) and the acoustic parameters investigated. Public Library of Science 2018-06-21 /pmc/articles/PMC6013104/ /pubmed/29928036 http://dx.doi.org/10.1371/journal.pone.0199428 Text en © 2018 Lehnen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lehnen, Lisa
Schorcht, Wigbert
Karst, Inken
Biedermann, Martin
Kerth, Gerald
Puechmaille, Sebastien J.
Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title_full Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title_fullStr Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title_full_unstemmed Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title_short Using Approximate Bayesian Computation to infer sex ratios from acoustic data
title_sort using approximate bayesian computation to infer sex ratios from acoustic data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013104/
https://www.ncbi.nlm.nih.gov/pubmed/29928036
http://dx.doi.org/10.1371/journal.pone.0199428
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