LSAT: Liliaceae Simple Sequences Analysis Tool, a web server

LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining...

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Detalles Bibliográficos
Autores principales: Biswas, Manosh Kumar, Natarajan, Sathishkumar, Biswas, Dhiman, Nath, Ujjal Kumar, Park, Jong-In, Nou, Ill-Sup
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2018
Materias:
Web Server
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016758/
https://www.ncbi.nlm.nih.gov/pubmed/29983488
http://dx.doi.org/10.6026/97320630014181
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author Biswas, Manosh Kumar
Natarajan, Sathishkumar
Biswas, Dhiman
Nath, Ujjal Kumar
Park, Jong-In
Nou, Ill-Sup
author_facet Biswas, Manosh Kumar
Natarajan, Sathishkumar
Biswas, Dhiman
Nath, Ujjal Kumar
Park, Jong-In
Nou, Ill-Sup
author_sort Biswas, Manosh Kumar
collection PubMed
description LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining and primer design. LSAT is user friendly with customizable search parameters producing visual output having download options. The current version of LSAT is backed by two data sets, namely, lily EST (Expressed Sequence Tag) from NCBI and lily nr (non redundant) with 4,099 and 216,768 unigenes, respectively. LSAT will be updated regularly upon availability of additional data (either EST and/or transcriptome) on Liliaceae. AVAILABILITY: LSAT is available for free at http://210.110.86.160/Lsat/Lsat.html
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spelling pubmed-60167582018-07-06 LSAT: Liliaceae Simple Sequences Analysis Tool, a web server Biswas, Manosh Kumar Natarajan, Sathishkumar Biswas, Dhiman Nath, Ujjal Kumar Park, Jong-In Nou, Ill-Sup Bioinformation Web Server LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining and primer design. LSAT is user friendly with customizable search parameters producing visual output having download options. The current version of LSAT is backed by two data sets, namely, lily EST (Expressed Sequence Tag) from NCBI and lily nr (non redundant) with 4,099 and 216,768 unigenes, respectively. LSAT will be updated regularly upon availability of additional data (either EST and/or transcriptome) on Liliaceae. AVAILABILITY: LSAT is available for free at http://210.110.86.160/Lsat/Lsat.html Biomedical Informatics 2018-04-30 /pmc/articles/PMC6016758/ /pubmed/29983488 http://dx.doi.org/10.6026/97320630014181 Text en © 2018 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Web Server
Biswas, Manosh Kumar
Natarajan, Sathishkumar
Biswas, Dhiman
Nath, Ujjal Kumar
Park, Jong-In
Nou, Ill-Sup
LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title_full LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title_fullStr LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title_full_unstemmed LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title_short LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
title_sort lsat: liliaceae simple sequences analysis tool, a web server
topic Web Server
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016758/
https://www.ncbi.nlm.nih.gov/pubmed/29983488
http://dx.doi.org/10.6026/97320630014181
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