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Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning

Having accurate, detailed, and up-to-date information about the location and behavior of animals in the wild would improve our ability to study and conserve ecosystems. We investigate the ability to automatically, accurately, and inexpensively collect such data, which could help catalyze the transfo...

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Autores principales: Norouzzadeh, Mohammad Sadegh, Nguyen, Anh, Kosmala, Margaret, Swanson, Alexandra, Palmer, Meredith S., Packer, Craig, Clune, Jeff
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016780/
https://www.ncbi.nlm.nih.gov/pubmed/29871948
http://dx.doi.org/10.1073/pnas.1719367115
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author Norouzzadeh, Mohammad Sadegh
Nguyen, Anh
Kosmala, Margaret
Swanson, Alexandra
Palmer, Meredith S.
Packer, Craig
Clune, Jeff
author_facet Norouzzadeh, Mohammad Sadegh
Nguyen, Anh
Kosmala, Margaret
Swanson, Alexandra
Palmer, Meredith S.
Packer, Craig
Clune, Jeff
author_sort Norouzzadeh, Mohammad Sadegh
collection PubMed
description Having accurate, detailed, and up-to-date information about the location and behavior of animals in the wild would improve our ability to study and conserve ecosystems. We investigate the ability to automatically, accurately, and inexpensively collect such data, which could help catalyze the transformation of many fields of ecology, wildlife biology, zoology, conservation biology, and animal behavior into “big data” sciences. Motion-sensor “camera traps” enable collecting wildlife pictures inexpensively, unobtrusively, and frequently. However, extracting information from these pictures remains an expensive, time-consuming, manual task. We demonstrate that such information can be automatically extracted by deep learning, a cutting-edge type of artificial intelligence. We train deep convolutional neural networks to identify, count, and describe the behaviors of 48 species in the 3.2 million-image Snapshot Serengeti dataset. Our deep neural networks automatically identify animals with >93.8% accuracy, and we expect that number to improve rapidly in years to come. More importantly, if our system classifies only images it is confident about, our system can automate animal identification for 99.3% of the data while still performing at the same 96.6% accuracy as that of crowdsourced teams of human volunteers, saving >8.4 y (i.e., >17,000 h at 40 h/wk) of human labeling effort on this 3.2 million-image dataset. Those efficiency gains highlight the importance of using deep neural networks to automate data extraction from camera-trap images, reducing a roadblock for this widely used technology. Our results suggest that deep learning could enable the inexpensive, unobtrusive, high-volume, and even real-time collection of a wealth of information about vast numbers of animals in the wild.
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spelling pubmed-60167802018-06-26 Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning Norouzzadeh, Mohammad Sadegh Nguyen, Anh Kosmala, Margaret Swanson, Alexandra Palmer, Meredith S. Packer, Craig Clune, Jeff Proc Natl Acad Sci U S A PNAS Plus Having accurate, detailed, and up-to-date information about the location and behavior of animals in the wild would improve our ability to study and conserve ecosystems. We investigate the ability to automatically, accurately, and inexpensively collect such data, which could help catalyze the transformation of many fields of ecology, wildlife biology, zoology, conservation biology, and animal behavior into “big data” sciences. Motion-sensor “camera traps” enable collecting wildlife pictures inexpensively, unobtrusively, and frequently. However, extracting information from these pictures remains an expensive, time-consuming, manual task. We demonstrate that such information can be automatically extracted by deep learning, a cutting-edge type of artificial intelligence. We train deep convolutional neural networks to identify, count, and describe the behaviors of 48 species in the 3.2 million-image Snapshot Serengeti dataset. Our deep neural networks automatically identify animals with >93.8% accuracy, and we expect that number to improve rapidly in years to come. More importantly, if our system classifies only images it is confident about, our system can automate animal identification for 99.3% of the data while still performing at the same 96.6% accuracy as that of crowdsourced teams of human volunteers, saving >8.4 y (i.e., >17,000 h at 40 h/wk) of human labeling effort on this 3.2 million-image dataset. Those efficiency gains highlight the importance of using deep neural networks to automate data extraction from camera-trap images, reducing a roadblock for this widely used technology. Our results suggest that deep learning could enable the inexpensive, unobtrusive, high-volume, and even real-time collection of a wealth of information about vast numbers of animals in the wild. National Academy of Sciences 2018-06-19 2018-06-05 /pmc/articles/PMC6016780/ /pubmed/29871948 http://dx.doi.org/10.1073/pnas.1719367115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle PNAS Plus
Norouzzadeh, Mohammad Sadegh
Nguyen, Anh
Kosmala, Margaret
Swanson, Alexandra
Palmer, Meredith S.
Packer, Craig
Clune, Jeff
Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title_full Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title_fullStr Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title_full_unstemmed Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title_short Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
title_sort automatically identifying, counting, and describing wild animals in camera-trap images with deep learning
topic PNAS Plus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016780/
https://www.ncbi.nlm.nih.gov/pubmed/29871948
http://dx.doi.org/10.1073/pnas.1719367115
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