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Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii
Paeonia ostii, a common oil-tree peony, is important ornamentally and medicinally. However, there are few studies on the chloroplast genome of Paeonia ostii. We sequenced and analyzed the complete chloroplast genome of P. ostii. The size of the P. ostii chloroplast genome is 152,153 bp, including a...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6017096/ https://www.ncbi.nlm.nih.gov/pubmed/29373520 http://dx.doi.org/10.3390/molecules23020246 |
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author | Guo, Shuai Guo, Lili Zhao, Wei Xu, Jiang Li, Yuying Zhang, Xiaoyan Shen, Xiaofeng Wu, Mingli Hou, Xiaogai |
author_facet | Guo, Shuai Guo, Lili Zhao, Wei Xu, Jiang Li, Yuying Zhang, Xiaoyan Shen, Xiaofeng Wu, Mingli Hou, Xiaogai |
author_sort | Guo, Shuai |
collection | PubMed |
description | Paeonia ostii, a common oil-tree peony, is important ornamentally and medicinally. However, there are few studies on the chloroplast genome of Paeonia ostii. We sequenced and analyzed the complete chloroplast genome of P. ostii. The size of the P. ostii chloroplast genome is 152,153 bp, including a large single-copy region (85,373 bp), a small single-copy region (17,054 bp), and a pair of inverted repeats regions (24,863 bp). The P. ostii chloroplast genome encodes 111 genes, including 77 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The genome contains forward repeats (22), palindromic repeats (28), and tandem repeats (24). The presence of rich simple-sequence repeat loci in the genome provides opportunities for future population genetics work for breeding new varieties. A phylogenetic analysis showed that P. ostii is more closely related to Paeonia delavayi and Paeonia ludlowii than to Paeonia obovata and Paeonia veitchii. The results of this study provide an assembly of the whole chloroplast genome of P. ostii, which may be useful for future breeding and further biological discoveries. It will provide a theoretical basis for the improvement of peony yield and the determination of phylogenetic status. |
format | Online Article Text |
id | pubmed-6017096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-60170962018-11-13 Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii Guo, Shuai Guo, Lili Zhao, Wei Xu, Jiang Li, Yuying Zhang, Xiaoyan Shen, Xiaofeng Wu, Mingli Hou, Xiaogai Molecules Article Paeonia ostii, a common oil-tree peony, is important ornamentally and medicinally. However, there are few studies on the chloroplast genome of Paeonia ostii. We sequenced and analyzed the complete chloroplast genome of P. ostii. The size of the P. ostii chloroplast genome is 152,153 bp, including a large single-copy region (85,373 bp), a small single-copy region (17,054 bp), and a pair of inverted repeats regions (24,863 bp). The P. ostii chloroplast genome encodes 111 genes, including 77 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The genome contains forward repeats (22), palindromic repeats (28), and tandem repeats (24). The presence of rich simple-sequence repeat loci in the genome provides opportunities for future population genetics work for breeding new varieties. A phylogenetic analysis showed that P. ostii is more closely related to Paeonia delavayi and Paeonia ludlowii than to Paeonia obovata and Paeonia veitchii. The results of this study provide an assembly of the whole chloroplast genome of P. ostii, which may be useful for future breeding and further biological discoveries. It will provide a theoretical basis for the improvement of peony yield and the determination of phylogenetic status. MDPI 2018-01-26 /pmc/articles/PMC6017096/ /pubmed/29373520 http://dx.doi.org/10.3390/molecules23020246 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Guo, Shuai Guo, Lili Zhao, Wei Xu, Jiang Li, Yuying Zhang, Xiaoyan Shen, Xiaofeng Wu, Mingli Hou, Xiaogai Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title_full | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title_fullStr | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title_full_unstemmed | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title_short | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii |
title_sort | complete chloroplast genome sequence and phylogenetic analysis of paeonia ostii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6017096/ https://www.ncbi.nlm.nih.gov/pubmed/29373520 http://dx.doi.org/10.3390/molecules23020246 |
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