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Web Tool for Navigating and Plotting SomaLogic ADAT Files
SOMAscan™ is a complex proteomic platform created by SomaLogic. Experimental data resulting from the assay is provided by SomaLogic in a proprietary text-based format called ADAT. This manuscript describes a user-friendly point and click open source, platform-independent software tool designed to be...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6017986/ https://www.ncbi.nlm.nih.gov/pubmed/29951204 http://dx.doi.org/10.5334/jors.166 |
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author | Cheung, Foo Fantoni, Giovanna Conner, Maria Sellers, Brian A Kotliarov, Yuri Candia, Julián Stagliano, Katherine Biancotto, Angélique |
author_facet | Cheung, Foo Fantoni, Giovanna Conner, Maria Sellers, Brian A Kotliarov, Yuri Candia, Julián Stagliano, Katherine Biancotto, Angélique |
author_sort | Cheung, Foo |
collection | PubMed |
description | SOMAscan™ is a complex proteomic platform created by SomaLogic. Experimental data resulting from the assay is provided by SomaLogic in a proprietary text-based format called ADAT. This manuscript describes a user-friendly point and click open source, platform-independent software tool designed to be used for navigating and plotting data from an ADAT file. This tool was used either alone or in conjunction with other tools as a first pass analysis of the data on several different on-going research projects. We have seen a need from our experience for a web interface to the ADAT file so that users can navigate, generate plots, perform QC and conduct statistical analysis on their own data in a point and click manner. After several rounds of interacting with biologists and their requirements with respect to data analysis, we present an online interactive Shiny Web Tool for Navigating and Plotting data contained within the ADAT file. Extensive video tutorials, example data, the tool and the source code are available online. |
format | Online Article Text |
id | pubmed-6017986 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
record_format | MEDLINE/PubMed |
spelling | pubmed-60179862018-06-25 Web Tool for Navigating and Plotting SomaLogic ADAT Files Cheung, Foo Fantoni, Giovanna Conner, Maria Sellers, Brian A Kotliarov, Yuri Candia, Julián Stagliano, Katherine Biancotto, Angélique J Open Res Softw Article SOMAscan™ is a complex proteomic platform created by SomaLogic. Experimental data resulting from the assay is provided by SomaLogic in a proprietary text-based format called ADAT. This manuscript describes a user-friendly point and click open source, platform-independent software tool designed to be used for navigating and plotting data from an ADAT file. This tool was used either alone or in conjunction with other tools as a first pass analysis of the data on several different on-going research projects. We have seen a need from our experience for a web interface to the ADAT file so that users can navigate, generate plots, perform QC and conduct statistical analysis on their own data in a point and click manner. After several rounds of interacting with biologists and their requirements with respect to data analysis, we present an online interactive Shiny Web Tool for Navigating and Plotting data contained within the ADAT file. Extensive video tutorials, example data, the tool and the source code are available online. 2017-09-08 2017 /pmc/articles/PMC6017986/ /pubmed/29951204 http://dx.doi.org/10.5334/jors.166 Text en This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (CC-BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. See http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Cheung, Foo Fantoni, Giovanna Conner, Maria Sellers, Brian A Kotliarov, Yuri Candia, Julián Stagliano, Katherine Biancotto, Angélique Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title | Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title_full | Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title_fullStr | Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title_full_unstemmed | Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title_short | Web Tool for Navigating and Plotting SomaLogic ADAT Files |
title_sort | web tool for navigating and plotting somalogic adat files |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6017986/ https://www.ncbi.nlm.nih.gov/pubmed/29951204 http://dx.doi.org/10.5334/jors.166 |
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