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Structural biology data archiving – where we are and what lies ahead

For almost 50 years, structural biology has endeavoured to conserve and share its experimental data and their interpretations (usually, atomistic models) through global public archives such as the Protein Data Bank, Electron Microscopy Data Bank and Biological Magnetic Resonance Data Bank (BMRB). Th...

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Detalles Bibliográficos
Autores principales: Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019198/
https://www.ncbi.nlm.nih.gov/pubmed/29749603
http://dx.doi.org/10.1002/1873-3468.13086
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author Kleywegt, Gerard J.
Velankar, Sameer
Patwardhan, Ardan
author_facet Kleywegt, Gerard J.
Velankar, Sameer
Patwardhan, Ardan
author_sort Kleywegt, Gerard J.
collection PubMed
description For almost 50 years, structural biology has endeavoured to conserve and share its experimental data and their interpretations (usually, atomistic models) through global public archives such as the Protein Data Bank, Electron Microscopy Data Bank and Biological Magnetic Resonance Data Bank (BMRB). These archives are treasure troves of freely accessible data that document our quest for molecular or atomic understanding of biological function and processes in health and disease. They have prepared the field to tackle new archiving challenges as more and more (combinations of) techniques are being utilized to elucidate structure at ever increasing length scales. Furthermore, the field has made substantial efforts to develop validation methods that help users to assess the reliability of structures and to identify the most appropriate data for their needs. In this Review, we present an overview of public data archives in structural biology and discuss the importance of validation for users and producers of structural data. Finally, we sketch our efforts to integrate structural data with bioimaging data and with other sources of biological data. This will make relevant structural information available and more easily discoverable for a wide range of scientists.
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spelling pubmed-60191982018-11-15 Structural biology data archiving – where we are and what lies ahead Kleywegt, Gerard J. Velankar, Sameer Patwardhan, Ardan FEBS Lett Review Articles For almost 50 years, structural biology has endeavoured to conserve and share its experimental data and their interpretations (usually, atomistic models) through global public archives such as the Protein Data Bank, Electron Microscopy Data Bank and Biological Magnetic Resonance Data Bank (BMRB). These archives are treasure troves of freely accessible data that document our quest for molecular or atomic understanding of biological function and processes in health and disease. They have prepared the field to tackle new archiving challenges as more and more (combinations of) techniques are being utilized to elucidate structure at ever increasing length scales. Furthermore, the field has made substantial efforts to develop validation methods that help users to assess the reliability of structures and to identify the most appropriate data for their needs. In this Review, we present an overview of public data archives in structural biology and discuss the importance of validation for users and producers of structural data. Finally, we sketch our efforts to integrate structural data with bioimaging data and with other sources of biological data. This will make relevant structural information available and more easily discoverable for a wide range of scientists. John Wiley and Sons Inc. 2018-05-25 2018-06 /pmc/articles/PMC6019198/ /pubmed/29749603 http://dx.doi.org/10.1002/1873-3468.13086 Text en © 2018 The Authors. FEBS Letters published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Articles
Kleywegt, Gerard J.
Velankar, Sameer
Patwardhan, Ardan
Structural biology data archiving – where we are and what lies ahead
title Structural biology data archiving – where we are and what lies ahead
title_full Structural biology data archiving – where we are and what lies ahead
title_fullStr Structural biology data archiving – where we are and what lies ahead
title_full_unstemmed Structural biology data archiving – where we are and what lies ahead
title_short Structural biology data archiving – where we are and what lies ahead
title_sort structural biology data archiving – where we are and what lies ahead
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019198/
https://www.ncbi.nlm.nih.gov/pubmed/29749603
http://dx.doi.org/10.1002/1873-3468.13086
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