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Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties

Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloi...

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Autores principales: Rocha, Jefferson A., Rego, Nayra C. S., Carvalho, Bruna T. S., Silva, Francisco I., Sousa, Jose A., Ramos, Ricardo M., Passos, Ionara N. G., de Moraes, Josué, Leite, Jose R. S. A., Lima, Francisco C. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019389/
https://www.ncbi.nlm.nih.gov/pubmed/29944674
http://dx.doi.org/10.1371/journal.pone.0198476
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author Rocha, Jefferson A.
Rego, Nayra C. S.
Carvalho, Bruna T. S.
Silva, Francisco I.
Sousa, Jose A.
Ramos, Ricardo M.
Passos, Ionara N. G.
de Moraes, Josué
Leite, Jose R. S. A.
Lima, Francisco C. A.
author_facet Rocha, Jefferson A.
Rego, Nayra C. S.
Carvalho, Bruna T. S.
Silva, Francisco I.
Sousa, Jose A.
Ramos, Ricardo M.
Passos, Ionara N. G.
de Moraes, Josué
Leite, Jose R. S. A.
Lima, Francisco C. A.
author_sort Rocha, Jefferson A.
collection PubMed
description Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloids of Pilocarpus microphyllus (Rutaceae) with schistosomicidal properties. The molecules of epiisopiloturine, epiisopilosine, isopilosine, pilosine, and macaubine were evaluated using theory models (B3lyp/SDD, B3lyp/6-31+G(d,p), B3lyp/6-311++G(d,p)). Absorption, distribution, metabolization, excretion, and toxicity (ADMET) predictions were used to determine the pharmacokinetic and pharmacodynamic properties of the alkaloids. After optimization, the molecules were submitted to molecular docking calculations with the purine nucleoside phosphorylase, thioredoxin glutathione reductase, methylthioadenosine phosphorylase, arginase, uridine phosphorylase, Cathepsin B1 and histone deacetylase 8 enzymes, which are possible targets of Schistosoma mansoni. The results showed that B3lyp/6-311++G(d,p) was the optimal model to describe the properties studied. Thermodynamic analysis showed that epiisopiloturine and epiisopilosine were the most stable isomers; however, the epiisopilosine ligand achieved a superior interaction with the enzymes studied in the molecular docking experiments, which corroborated the results of previous experimental studies on schistosomiasis.
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spelling pubmed-60193892018-07-07 Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties Rocha, Jefferson A. Rego, Nayra C. S. Carvalho, Bruna T. S. Silva, Francisco I. Sousa, Jose A. Ramos, Ricardo M. Passos, Ionara N. G. de Moraes, Josué Leite, Jose R. S. A. Lima, Francisco C. A. PLoS One Research Article Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloids of Pilocarpus microphyllus (Rutaceae) with schistosomicidal properties. The molecules of epiisopiloturine, epiisopilosine, isopilosine, pilosine, and macaubine were evaluated using theory models (B3lyp/SDD, B3lyp/6-31+G(d,p), B3lyp/6-311++G(d,p)). Absorption, distribution, metabolization, excretion, and toxicity (ADMET) predictions were used to determine the pharmacokinetic and pharmacodynamic properties of the alkaloids. After optimization, the molecules were submitted to molecular docking calculations with the purine nucleoside phosphorylase, thioredoxin glutathione reductase, methylthioadenosine phosphorylase, arginase, uridine phosphorylase, Cathepsin B1 and histone deacetylase 8 enzymes, which are possible targets of Schistosoma mansoni. The results showed that B3lyp/6-311++G(d,p) was the optimal model to describe the properties studied. Thermodynamic analysis showed that epiisopiloturine and epiisopilosine were the most stable isomers; however, the epiisopilosine ligand achieved a superior interaction with the enzymes studied in the molecular docking experiments, which corroborated the results of previous experimental studies on schistosomiasis. Public Library of Science 2018-06-26 /pmc/articles/PMC6019389/ /pubmed/29944674 http://dx.doi.org/10.1371/journal.pone.0198476 Text en © 2018 Rocha et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Rocha, Jefferson A.
Rego, Nayra C. S.
Carvalho, Bruna T. S.
Silva, Francisco I.
Sousa, Jose A.
Ramos, Ricardo M.
Passos, Ionara N. G.
de Moraes, Josué
Leite, Jose R. S. A.
Lima, Francisco C. A.
Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title_full Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title_fullStr Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title_full_unstemmed Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title_short Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
title_sort computational quantum chemistry, molecular docking, and admet predictions of imidazole alkaloids of pilocarpus microphyllus with schistosomicidal properties
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019389/
https://www.ncbi.nlm.nih.gov/pubmed/29944674
http://dx.doi.org/10.1371/journal.pone.0198476
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