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Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties
Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloi...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019389/ https://www.ncbi.nlm.nih.gov/pubmed/29944674 http://dx.doi.org/10.1371/journal.pone.0198476 |
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author | Rocha, Jefferson A. Rego, Nayra C. S. Carvalho, Bruna T. S. Silva, Francisco I. Sousa, Jose A. Ramos, Ricardo M. Passos, Ionara N. G. de Moraes, Josué Leite, Jose R. S. A. Lima, Francisco C. A. |
author_facet | Rocha, Jefferson A. Rego, Nayra C. S. Carvalho, Bruna T. S. Silva, Francisco I. Sousa, Jose A. Ramos, Ricardo M. Passos, Ionara N. G. de Moraes, Josué Leite, Jose R. S. A. Lima, Francisco C. A. |
author_sort | Rocha, Jefferson A. |
collection | PubMed |
description | Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloids of Pilocarpus microphyllus (Rutaceae) with schistosomicidal properties. The molecules of epiisopiloturine, epiisopilosine, isopilosine, pilosine, and macaubine were evaluated using theory models (B3lyp/SDD, B3lyp/6-31+G(d,p), B3lyp/6-311++G(d,p)). Absorption, distribution, metabolization, excretion, and toxicity (ADMET) predictions were used to determine the pharmacokinetic and pharmacodynamic properties of the alkaloids. After optimization, the molecules were submitted to molecular docking calculations with the purine nucleoside phosphorylase, thioredoxin glutathione reductase, methylthioadenosine phosphorylase, arginase, uridine phosphorylase, Cathepsin B1 and histone deacetylase 8 enzymes, which are possible targets of Schistosoma mansoni. The results showed that B3lyp/6-311++G(d,p) was the optimal model to describe the properties studied. Thermodynamic analysis showed that epiisopiloturine and epiisopilosine were the most stable isomers; however, the epiisopilosine ligand achieved a superior interaction with the enzymes studied in the molecular docking experiments, which corroborated the results of previous experimental studies on schistosomiasis. |
format | Online Article Text |
id | pubmed-6019389 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60193892018-07-07 Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties Rocha, Jefferson A. Rego, Nayra C. S. Carvalho, Bruna T. S. Silva, Francisco I. Sousa, Jose A. Ramos, Ricardo M. Passos, Ionara N. G. de Moraes, Josué Leite, Jose R. S. A. Lima, Francisco C. A. PLoS One Research Article Schistosomiasis affects million people and its control is widely dependent on a single drug, praziquantel. Computational chemistry has led to the development of new tools that predict molecular properties related to pharmacological potential. We conducted a theoretical study of the imizadole alkaloids of Pilocarpus microphyllus (Rutaceae) with schistosomicidal properties. The molecules of epiisopiloturine, epiisopilosine, isopilosine, pilosine, and macaubine were evaluated using theory models (B3lyp/SDD, B3lyp/6-31+G(d,p), B3lyp/6-311++G(d,p)). Absorption, distribution, metabolization, excretion, and toxicity (ADMET) predictions were used to determine the pharmacokinetic and pharmacodynamic properties of the alkaloids. After optimization, the molecules were submitted to molecular docking calculations with the purine nucleoside phosphorylase, thioredoxin glutathione reductase, methylthioadenosine phosphorylase, arginase, uridine phosphorylase, Cathepsin B1 and histone deacetylase 8 enzymes, which are possible targets of Schistosoma mansoni. The results showed that B3lyp/6-311++G(d,p) was the optimal model to describe the properties studied. Thermodynamic analysis showed that epiisopiloturine and epiisopilosine were the most stable isomers; however, the epiisopilosine ligand achieved a superior interaction with the enzymes studied in the molecular docking experiments, which corroborated the results of previous experimental studies on schistosomiasis. Public Library of Science 2018-06-26 /pmc/articles/PMC6019389/ /pubmed/29944674 http://dx.doi.org/10.1371/journal.pone.0198476 Text en © 2018 Rocha et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rocha, Jefferson A. Rego, Nayra C. S. Carvalho, Bruna T. S. Silva, Francisco I. Sousa, Jose A. Ramos, Ricardo M. Passos, Ionara N. G. de Moraes, Josué Leite, Jose R. S. A. Lima, Francisco C. A. Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title | Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title_full | Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title_fullStr | Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title_full_unstemmed | Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title_short | Computational quantum chemistry, molecular docking, and ADMET predictions of imidazole alkaloids of Pilocarpus microphyllus with schistosomicidal properties |
title_sort | computational quantum chemistry, molecular docking, and admet predictions of imidazole alkaloids of pilocarpus microphyllus with schistosomicidal properties |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019389/ https://www.ncbi.nlm.nih.gov/pubmed/29944674 http://dx.doi.org/10.1371/journal.pone.0198476 |
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