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Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils

While traditional laboratory methods of determining soil organic carbon (SOC) content are generally simple, this becomes more challenging when carbonates are present in the soil; such is commonly found in semi-arid areas. Additionally, soil inorganic carbon (SIC) content itself is difficult to deter...

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Autores principales: Filippi, Patrick, Cattle, Stephen R., Bishop, Thomas F.A., Jones, Edward J., Minasny, Budiman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019689/
https://www.ncbi.nlm.nih.gov/pubmed/30013943
http://dx.doi.org/10.1016/j.mex.2018.05.019
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author Filippi, Patrick
Cattle, Stephen R.
Bishop, Thomas F.A.
Jones, Edward J.
Minasny, Budiman
author_facet Filippi, Patrick
Cattle, Stephen R.
Bishop, Thomas F.A.
Jones, Edward J.
Minasny, Budiman
author_sort Filippi, Patrick
collection PubMed
description While traditional laboratory methods of determining soil organic carbon (SOC) content are generally simple, this becomes more challenging when carbonates are present in the soil; such is commonly found in semi-arid areas. Additionally, soil inorganic carbon (SIC) content itself is difficult to determine. This study uses visible near infrared (VisNIR) spectra to predict SOC and SIC contents of samples, and the impact of including soil pH and soil total carbon (STC) data as predictor variables was evaluated. The results indicated that combining available soil pH and STC content data with VisNIR spectra dramatically improved prediction accuracy of the Cubist models. Using the full suite of predictor variables, Cubist models trained on the calibration dataset (75%) could predict the validation dataset (25%) for SOC content with a Lin’s concordance correlation coefficient (LCCC) of 0.94, and an LCCC of 0.83 for SIC content. This is compared to an LCCC of 0.81 and 0.35 for SOC and SIC content, respectively, when no ancillary soil data was included with VisNIR spectra as predictor variables. These results suggest that there may be promise for using other readily available soil data in combination with VisNIR spectra to improve the predictions of different soil properties. • It can be laborious and expensive to measure soil organic and inorganic carbon content with traditional laboratory methods, and there has been recent focus on using spectroscopic techniques to overcome this. • This study demonstrates that combining ancillary soil data (pH and total carbon content) with these spectroscopic techniques can considerably improve predictions of SOC and SIC content.
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spelling pubmed-60196892018-07-16 Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils Filippi, Patrick Cattle, Stephen R. Bishop, Thomas F.A. Jones, Edward J. Minasny, Budiman MethodsX Agricultural and Biological Science While traditional laboratory methods of determining soil organic carbon (SOC) content are generally simple, this becomes more challenging when carbonates are present in the soil; such is commonly found in semi-arid areas. Additionally, soil inorganic carbon (SIC) content itself is difficult to determine. This study uses visible near infrared (VisNIR) spectra to predict SOC and SIC contents of samples, and the impact of including soil pH and soil total carbon (STC) data as predictor variables was evaluated. The results indicated that combining available soil pH and STC content data with VisNIR spectra dramatically improved prediction accuracy of the Cubist models. Using the full suite of predictor variables, Cubist models trained on the calibration dataset (75%) could predict the validation dataset (25%) for SOC content with a Lin’s concordance correlation coefficient (LCCC) of 0.94, and an LCCC of 0.83 for SIC content. This is compared to an LCCC of 0.81 and 0.35 for SOC and SIC content, respectively, when no ancillary soil data was included with VisNIR spectra as predictor variables. These results suggest that there may be promise for using other readily available soil data in combination with VisNIR spectra to improve the predictions of different soil properties. • It can be laborious and expensive to measure soil organic and inorganic carbon content with traditional laboratory methods, and there has been recent focus on using spectroscopic techniques to overcome this. • This study demonstrates that combining ancillary soil data (pH and total carbon content) with these spectroscopic techniques can considerably improve predictions of SOC and SIC content. Elsevier 2018-06-02 /pmc/articles/PMC6019689/ /pubmed/30013943 http://dx.doi.org/10.1016/j.mex.2018.05.019 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Filippi, Patrick
Cattle, Stephen R.
Bishop, Thomas F.A.
Jones, Edward J.
Minasny, Budiman
Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title_full Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title_fullStr Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title_full_unstemmed Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title_short Combining ancillary soil data with VisNIR spectra to improve predictions of organic and inorganic carbon content of soils
title_sort combining ancillary soil data with visnir spectra to improve predictions of organic and inorganic carbon content of soils
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019689/
https://www.ncbi.nlm.nih.gov/pubmed/30013943
http://dx.doi.org/10.1016/j.mex.2018.05.019
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