Cargando…

The Kappa platform for rule-based modeling

MOTIVATION: We present an overview of the Kappa platform, an integrated suite of analysis and visualization techniques for building and interactively exploring rule-based models. The main components of the platform are the Kappa Simulator, the Kappa Static Analyzer and the Kappa Story Extractor. In...

Descripción completa

Detalles Bibliográficos
Autores principales:	Boutillier, Pierre, Maasha, Mutaamba, Li, Xing, Medina-Abarca, Héctor F, Krivine, Jean, Feret, Jérôme, Cristescu, Ioana, Forbes, Angus G, Fontana, Walter
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Ismb 2018–Intelligent Systems for Molecular Biology Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022607/ https://www.ncbi.nlm.nih.gov/pubmed/29950016 http://dx.doi.org/10.1093/bioinformatics/bty272

Ejemplares similares

AnoniMME: bringing anonymity to the Matchmaker Exchange platform for rare disease gene discovery
por: Oprisanu, Bristena, et al.
Publicado: (2018)

Author Index
Publicado: (2018)

A novel methodology on distributed representations of proteins using their interacting ligands
por: Öztürk, Hakime, et al.
Publicado: (2018)

ISMB 2018 PROCEEDINGS PAPERS COMMITTEE
Publicado: (2018)

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information
por: Zakeri, Pooya, et al.
Publicado: (2018)

Driver gene mutations based clustering of tumors: methods and applications
por: Zhang, Wensheng, et al.
Publicado: (2018)

mGPfusion: predicting protein stability changes with Gaussian process kernel learning and data fusion
por: Jokinen, Emmi, et al.
Publicado: (2018)

A scalable estimator of SNP heritability for biobank-scale data
por: Wu, Yue, et al.
Publicado: (2018)

MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples
por: Asgari, Ehsaneddin, et al.
Publicado: (2018)

aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences
por: Glouzon, Jean-Pierre Séhi, et al.
Publicado: (2018)

DisruPPI: structure-based computational redesign algorithm for protein binding disruption
por: Choi, Yoonjoo, et al.
Publicado: (2018)

ISMB 2018 proceedings
por: Bromberg, Yana, et al.
Publicado: (2018)

Enumerating consistent sub-graphs of directed acyclic graphs: an insight into biomedical ontologies
por: Peng, Yisu, et al.
Publicado: (2018)

Improving genomics-based predictions for precision medicine through active elicitation of expert knowledge
por: Sundin, Iiris, et al.
Publicado: (2018)

An optimization framework for network annotation
por: Patkar, Sushant, et al.
Publicado: (2018)

Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge
por: Mukherjee, Sumit, et al.
Publicado: (2018)

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing
por: Clement, Kendell, et al.
Publicado: (2018)

Modeling polypharmacy side effects with graph convolutional networks
por: Zitnik, Marinka, et al.
Publicado: (2018)

Deconvolution and phylogeny inference of structural variations in tumor genomic samples
por: Eaton, Jesse, et al.
Publicado: (2018)

COSSMO: predicting competitive alternative splice site selection using deep learning
por: Bretschneider, Hannes, et al.
Publicado: (2018)

GSEA-InContext: identifying novel and common patterns in expression experiments
por: Powers, Rani K, et al.
Publicado: (2018)

SigMat: a classification scheme for gene signature matching
por: Xiao, Jinfeng, et al.
Publicado: (2018)

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization
por: Ghareghani, Maryam, et al.
Publicado: (2018)

A unifying framework for joint trait analysis under a non-infinitesimal model
por: Johnson, Ruth, et al.
Publicado: (2018)

Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations
por: Smaili, Fatima Zohra, et al.
Publicado: (2018)

Random forest based similarity learning for single cell RNA sequencing data
por: Pouyan, Maziyar Baran, et al.
Publicado: (2018)

Protein threading using residue co-variation and deep learning
por: Zhu, Jianwei, et al.
Publicado: (2018)

A new method for constructing tumor specific gene co-expression networks based on samples with tumor purity heterogeneity
por: Petralia, Francesca, et al.
Publicado: (2018)

Learning with multiple pairwise kernels for drug bioactivity prediction
por: Cichonska, Anna, et al.
Publicado: (2018)

Classifying tumors by supervised network propagation
por: Zhang, Wei, et al.
Publicado: (2018)

HFSP: high speed homology-driven function annotation of proteins
por: Mahlich, Yannick, et al.
Publicado: (2018)

PrimAlign: PageRank-inspired Markovian alignment for large biological networks
por: Kalecky, Karel, et al.
Publicado: (2018)

Accurate prediction of orthologs in the presence of divergence after duplication
por: Lafond, Manuel, et al.
Publicado: (2018)

A graph-based approach to diploid genome assembly
por: Garg, Shilpa, et al.
Publicado: (2018)

Bayesian parameter estimation for biochemical reaction networks using region-based adaptive parallel tempering
por: Ballnus, Benjamin, et al.
Publicado: (2018)

Haplotype phasing in single-cell DNA-sequencing data
por: Satas, Gryte, et al.
Publicado: (2018)

An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification
por: Zhao, Yixiu, et al.
Publicado: (2018)

Inference of species phylogenies from bi-allelic markers using pseudo-likelihood
por: Zhu, Jiafan, et al.
Publicado: (2018)

Training for translation between disciplines: a philosophy for life and data sciences curricula
por: Anton Feenstra, K, et al.
Publicado: (2018)

NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks
por: Abdellah, Marwan, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_s7r9avmvua3hnt984q3tagk1rt