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Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition

[Image: see text] Nucleophilic addition onto a carbonyl moiety is strongly affected by solvent, and correctly simulating this solvent effect is often beyond the capability of single-scale quantum mechanical (QM) models. This work explores multiscale approaches for the description of the reversible a...

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Autores principales: Boereboom, Jelle M., Fleurat-Lessard, Paul, Bulo, Rosa E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6023263/
https://www.ncbi.nlm.nih.gov/pubmed/29438621
http://dx.doi.org/10.1021/acs.jctc.7b01206
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author Boereboom, Jelle M.
Fleurat-Lessard, Paul
Bulo, Rosa E.
author_facet Boereboom, Jelle M.
Fleurat-Lessard, Paul
Bulo, Rosa E.
author_sort Boereboom, Jelle M.
collection PubMed
description [Image: see text] Nucleophilic addition onto a carbonyl moiety is strongly affected by solvent, and correctly simulating this solvent effect is often beyond the capability of single-scale quantum mechanical (QM) models. This work explores multiscale approaches for the description of the reversible and highly solvent-sensitive nucleophilic N|···C=O bond formation in an Me(2)N–(CH(2))(3)–CH=O molecule. In the first stage of this work, we rigorously compare and test four recent quantum mechanical/molecular mechanical (QM/MM) explicit solvation models, employing a QM description of water molecules in spherical regions around both the oxygen and the nitrogen atom of the solute. The accuracy of the models is benchmarked against a reference QM simulation, focusing on properties of the solvated Me(2)N–(CH(2))(3)–CH=O molecule in its ring-closed form. In the second stage, we select one of the models (continuous adaptive QM/MM) and use it to obtain a reliable free energy profile for the N|···C bond formation reaction. We find that the dual-sphere approach allows the model to accurately account for solvent reorganization along the entire reaction path. In contrast, a simple microsolvation model cannot adapt to the changing conditions and provides an incorrect description of the reaction process.
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spelling pubmed-60232632018-06-29 Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition Boereboom, Jelle M. Fleurat-Lessard, Paul Bulo, Rosa E. J Chem Theory Comput [Image: see text] Nucleophilic addition onto a carbonyl moiety is strongly affected by solvent, and correctly simulating this solvent effect is often beyond the capability of single-scale quantum mechanical (QM) models. This work explores multiscale approaches for the description of the reversible and highly solvent-sensitive nucleophilic N|···C=O bond formation in an Me(2)N–(CH(2))(3)–CH=O molecule. In the first stage of this work, we rigorously compare and test four recent quantum mechanical/molecular mechanical (QM/MM) explicit solvation models, employing a QM description of water molecules in spherical regions around both the oxygen and the nitrogen atom of the solute. The accuracy of the models is benchmarked against a reference QM simulation, focusing on properties of the solvated Me(2)N–(CH(2))(3)–CH=O molecule in its ring-closed form. In the second stage, we select one of the models (continuous adaptive QM/MM) and use it to obtain a reliable free energy profile for the N|···C bond formation reaction. We find that the dual-sphere approach allows the model to accurately account for solvent reorganization along the entire reaction path. In contrast, a simple microsolvation model cannot adapt to the changing conditions and provides an incorrect description of the reaction process. American Chemical Society 2018-02-13 2018-04-10 /pmc/articles/PMC6023263/ /pubmed/29438621 http://dx.doi.org/10.1021/acs.jctc.7b01206 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Boereboom, Jelle M.
Fleurat-Lessard, Paul
Bulo, Rosa E.
Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title_full Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title_fullStr Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title_full_unstemmed Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title_short Explicit Solvation Matters: Performance of QM/MM Solvation Models in Nucleophilic Addition
title_sort explicit solvation matters: performance of qm/mm solvation models in nucleophilic addition
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6023263/
https://www.ncbi.nlm.nih.gov/pubmed/29438621
http://dx.doi.org/10.1021/acs.jctc.7b01206
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