Cargando…
Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated s...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024138/ https://www.ncbi.nlm.nih.gov/pubmed/29988432 http://dx.doi.org/10.1002/ece3.4162 |
_version_ | 1783336003927277568 |
---|---|
author | Banner, Katharine M. Irvine, Kathryn M. Rodhouse, Thomas J. Wright, Wilson J. Rodriguez, Rogelio M. Litt, Andrea R. |
author_facet | Banner, Katharine M. Irvine, Kathryn M. Rodhouse, Thomas J. Wright, Wilson J. Rodriguez, Rogelio M. Litt, Andrea R. |
author_sort | Banner, Katharine M. |
collection | PubMed |
description | Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated software. Bat acoustic studies exemplify this challenge because large volumes of echolocation calls could be recorded and automatically classified to species. The standard occupancy model requires aggregating verified recordings to construct confirmed detection/non‐detection datasets. The multistep data processing workflow is not necessarily transparent nor consistent among studies. We share a workflow diagramming strategy that could provide coherency among practitioners. A false‐positive occupancy model is explored that accounts for misclassification errors and enables potential reduction in the number of confirmed detections. Simulations informed by real data were used to evaluate how much confirmation effort could be reduced without sacrificing site occupancy and detection error estimator bias and precision. We found even under a 50% reduction in total confirmation effort, estimator properties were reasonable for our assumed survey design, species‐specific parameter values, and desired precision. For transferability, a fully documented r package, OCacoustic, for implementing a false‐positive occupancy model is provided. Practitioners can apply OCacoustic to optimize their own study design (required sample sizes, number of visits, and confirmation scenarios) for properly implementing a false‐positive occupancy model with bat or other wildlife acoustic data. Additionally, our work highlights the importance of clearly defining research objectives and data processing strategies at the outset to align the study design with desired statistical inferences. |
format | Online Article Text |
id | pubmed-6024138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60241382018-07-09 Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification Banner, Katharine M. Irvine, Kathryn M. Rodhouse, Thomas J. Wright, Wilson J. Rodriguez, Rogelio M. Litt, Andrea R. Ecol Evol Original Research Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated software. Bat acoustic studies exemplify this challenge because large volumes of echolocation calls could be recorded and automatically classified to species. The standard occupancy model requires aggregating verified recordings to construct confirmed detection/non‐detection datasets. The multistep data processing workflow is not necessarily transparent nor consistent among studies. We share a workflow diagramming strategy that could provide coherency among practitioners. A false‐positive occupancy model is explored that accounts for misclassification errors and enables potential reduction in the number of confirmed detections. Simulations informed by real data were used to evaluate how much confirmation effort could be reduced without sacrificing site occupancy and detection error estimator bias and precision. We found even under a 50% reduction in total confirmation effort, estimator properties were reasonable for our assumed survey design, species‐specific parameter values, and desired precision. For transferability, a fully documented r package, OCacoustic, for implementing a false‐positive occupancy model is provided. Practitioners can apply OCacoustic to optimize their own study design (required sample sizes, number of visits, and confirmation scenarios) for properly implementing a false‐positive occupancy model with bat or other wildlife acoustic data. Additionally, our work highlights the importance of clearly defining research objectives and data processing strategies at the outset to align the study design with desired statistical inferences. John Wiley and Sons Inc. 2018-05-20 /pmc/articles/PMC6024138/ /pubmed/29988432 http://dx.doi.org/10.1002/ece3.4162 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Banner, Katharine M. Irvine, Kathryn M. Rodhouse, Thomas J. Wright, Wilson J. Rodriguez, Rogelio M. Litt, Andrea R. Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title | Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title_full | Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title_fullStr | Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title_full_unstemmed | Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title_short | Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
title_sort | improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024138/ https://www.ncbi.nlm.nih.gov/pubmed/29988432 http://dx.doi.org/10.1002/ece3.4162 |
work_keys_str_mv | AT bannerkatharinem improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification AT irvinekathrynm improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification AT rodhousethomasj improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification AT wrightwilsonj improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification AT rodriguezrogeliom improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification AT littandrear improvinggeographicallyextensiveacousticsurveydesignsformodelingspeciesoccurrencewithimperfectdetectionandmisidentification |