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Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification

Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated s...

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Autores principales: Banner, Katharine M., Irvine, Kathryn M., Rodhouse, Thomas J., Wright, Wilson J., Rodriguez, Rogelio M., Litt, Andrea R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024138/
https://www.ncbi.nlm.nih.gov/pubmed/29988432
http://dx.doi.org/10.1002/ece3.4162
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author Banner, Katharine M.
Irvine, Kathryn M.
Rodhouse, Thomas J.
Wright, Wilson J.
Rodriguez, Rogelio M.
Litt, Andrea R.
author_facet Banner, Katharine M.
Irvine, Kathryn M.
Rodhouse, Thomas J.
Wright, Wilson J.
Rodriguez, Rogelio M.
Litt, Andrea R.
author_sort Banner, Katharine M.
collection PubMed
description Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated software. Bat acoustic studies exemplify this challenge because large volumes of echolocation calls could be recorded and automatically classified to species. The standard occupancy model requires aggregating verified recordings to construct confirmed detection/non‐detection datasets. The multistep data processing workflow is not necessarily transparent nor consistent among studies. We share a workflow diagramming strategy that could provide coherency among practitioners. A false‐positive occupancy model is explored that accounts for misclassification errors and enables potential reduction in the number of confirmed detections. Simulations informed by real data were used to evaluate how much confirmation effort could be reduced without sacrificing site occupancy and detection error estimator bias and precision. We found even under a 50% reduction in total confirmation effort, estimator properties were reasonable for our assumed survey design, species‐specific parameter values, and desired precision. For transferability, a fully documented r package, OCacoustic, for implementing a false‐positive occupancy model is provided. Practitioners can apply OCacoustic to optimize their own study design (required sample sizes, number of visits, and confirmation scenarios) for properly implementing a false‐positive occupancy model with bat or other wildlife acoustic data. Additionally, our work highlights the importance of clearly defining research objectives and data processing strategies at the outset to align the study design with desired statistical inferences.
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spelling pubmed-60241382018-07-09 Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification Banner, Katharine M. Irvine, Kathryn M. Rodhouse, Thomas J. Wright, Wilson J. Rodriguez, Rogelio M. Litt, Andrea R. Ecol Evol Original Research Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated software. Bat acoustic studies exemplify this challenge because large volumes of echolocation calls could be recorded and automatically classified to species. The standard occupancy model requires aggregating verified recordings to construct confirmed detection/non‐detection datasets. The multistep data processing workflow is not necessarily transparent nor consistent among studies. We share a workflow diagramming strategy that could provide coherency among practitioners. A false‐positive occupancy model is explored that accounts for misclassification errors and enables potential reduction in the number of confirmed detections. Simulations informed by real data were used to evaluate how much confirmation effort could be reduced without sacrificing site occupancy and detection error estimator bias and precision. We found even under a 50% reduction in total confirmation effort, estimator properties were reasonable for our assumed survey design, species‐specific parameter values, and desired precision. For transferability, a fully documented r package, OCacoustic, for implementing a false‐positive occupancy model is provided. Practitioners can apply OCacoustic to optimize their own study design (required sample sizes, number of visits, and confirmation scenarios) for properly implementing a false‐positive occupancy model with bat or other wildlife acoustic data. Additionally, our work highlights the importance of clearly defining research objectives and data processing strategies at the outset to align the study design with desired statistical inferences. John Wiley and Sons Inc. 2018-05-20 /pmc/articles/PMC6024138/ /pubmed/29988432 http://dx.doi.org/10.1002/ece3.4162 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Banner, Katharine M.
Irvine, Kathryn M.
Rodhouse, Thomas J.
Wright, Wilson J.
Rodriguez, Rogelio M.
Litt, Andrea R.
Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title_full Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title_fullStr Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title_full_unstemmed Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title_short Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
title_sort improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024138/
https://www.ncbi.nlm.nih.gov/pubmed/29988432
http://dx.doi.org/10.1002/ece3.4162
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