Cargando…

Evaluating the Performance of De Novo Assembly Methods for Venom-Gland Transcriptomics

Venom-gland transcriptomics is a key tool in the study of the evolution, ecology, function, and pharmacology of animal venoms. In particular, gene-expression variation and coding sequences gained through transcriptomics provide key information for explaining functional venom variation over both ecol...

Descripción completa

Detalles Bibliográficos
Autores principales:	Holding, Matthew L., Margres, Mark J., Mason, Andrew J., Parkinson, Christopher L., Rokyta, Darin R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024825/ https://www.ncbi.nlm.nih.gov/pubmed/29921759 http://dx.doi.org/10.3390/toxins10060249

Ejemplares similares

The venom-gland transcriptome of the eastern coral snake (Micrurus fulvius) reveals high venom complexity in the intragenomic evolution of venoms
por: Margres, Mark J, et al.
Publicado: (2013)

The genesis of an exceptionally lethal venom in the timber rattlesnake (Crotalus horridus) revealed through comparative venom-gland transcriptomics
por: Rokyta, Darin R, et al.
Publicado: (2013)

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
por: Rokyta, Darin R, et al.
Publicado: (2012)

Comparative venom-gland transcriptomics and venom proteomics of four Sidewinder Rattlesnake (Crotalus cerastes) lineages reveal little differential expression despite individual variation
por: Hofmann, Erich P., et al.
Publicado: (2018)

Venom Gene Sequence Diversity and Expression Jointly Shape Diet Adaptation in Pitvipers
por: Mason, Andrew J., et al.
Publicado: (2022)

Post-transcriptional Mechanisms Contribute Little to Phenotypic Variation in Snake Venoms
por: Rokyta, Darin R., et al.
Publicado: (2015)

The genetics of venom ontogeny in the eastern diamondback rattlesnake (Crotalus adamanteus)
por: Rokyta, Darin R., et al.
Publicado: (2017)

De Novo Genome Assembly Highlights the Role of Lineage-Specific Gene Duplications in the Evolution of Venom in Fea's Viper (Azemiops feae)
por: Myers, Edward A, et al.
Publicado: (2022)

Phenotypic Variation in Mojave Rattlesnake (Crotalus scutulatus) Venom Is Driven by Four Toxin Families
por: Strickland, Jason L., et al.
Publicado: (2018)

Trait differentiation and modular toxin expression in palm-pitvipers
por: Mason, Andrew J., et al.
Publicado: (2020)

Gradual and Discrete Ontogenetic Shifts in Rattlesnake Venom Composition and Assessment of Hormonal and Ecological Correlates
por: Schonour, Richard B., et al.
Publicado: (2020)

RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes
por: McGivern, James J, et al.
Publicado: (2014)

Varying Intensities of Introgression Obscure Incipient Venom-Associated Speciation in the Timber Rattlesnake (Crotalus horridus)
por: Margres, Mark J., et al.
Publicado: (2021)

Transcriptome profiling of venom gland from wasp species: de novo assembly, functional annotation, and discovery of molecular markers
por: Tan, Junjie, et al.
Publicado: (2020)

Duvernoy’s Gland Transcriptomics of the Plains Black-Headed Snake, Tantilla nigriceps (Squamata, Colubridae): Unearthing the Venom of Small Rear-Fanged Snakes
por: Hofmann, Erich P., et al.
Publicado: (2021)

Elucidating the Venom Diversity in Sri Lankan Spectacled Cobra (Naja naja) through De Novo Venom Gland Transcriptomics, Venom Proteomics and Toxicity Neutralization
por: Wong, Kin Ying, et al.
Publicado: (2021)

Mass Fingerprinting of the Venom and Transcriptome of Venom Gland of Scorpion Centruroides tecomanus
por: Valdez-Velázquez, Laura L., et al.
Publicado: (2013)

De Novo Assembly of Venom Gland Transcriptome of Tropidolaemus wagleri (Temple Pit Viper, Malaysia) and Insights into the Origin of Its Major Toxin, Waglerin
por: Tan, Choo Hock, et al.
Publicado: (2023)

Venom-gland transcriptomics and venom proteomics of the Tibellus oblongus spider
por: Korolkova, Yuliya, et al.
Publicado: (2023)

Coralsnake Venomics: Analyses of Venom Gland Transcriptomes and Proteomes of Six Brazilian Taxa
por: Aird, Steven D., et al.
Publicado: (2017)

Echidna Venom Gland Transcriptome Provides Insights into the Evolution of Monotreme Venom
por: Wong, Emily S. W., et al.
Publicado: (2013)

De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species
por: Bouzid, Wafa, et al.
Publicado: (2014)

Exploring Toxin Genes of Myanmar Russell’s Viper, Daboia siamensis, through De Novo Venom Gland Transcriptomics
por: Yee, Khin Than, et al.
Publicado: (2023)

Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah)
por: Tan, Choo Hock, et al.
Publicado: (2015)

Extraction of Venom and Venom Gland Microdissections from Spiders for Proteomic and Transcriptomic Analyses
por: Garb, Jessica E.
Publicado: (2014)

Transcriptomic Analysis of the Spider Venom Gland Reveals Venom Diversity and Species Consanguinity
por: Hu, Zhaotun, et al.
Publicado: (2019)

Convergent evolution of venom gland transcriptomes across Metazoa
por: Zancolli, Giulia, et al.
Publicado: (2021)

Combined Venom Gland Transcriptomic and Venom Peptidomic Analysis of the Predatory Ant Odontomachus monticola
por: Kazuma, Kohei, et al.
Publicado: (2017)

Dissecting Toxicity: The Venom Gland Transcriptome and the Venom Proteome of the Highly Venomous Scorpion Centruroides limpidus (Karsch, 1879)
por: Cid-Uribe, Jimena I., et al.
Publicado: (2019)

Comparing de novo assemblers for 454 transcriptome data
por: Kumar, Sujai, et al.
Publicado: (2010)

De novo venom gland transcriptomics of Calliophis bivirgata flaviceps: uncovering the complexity of toxins from the Malayan blue coral snake
por: Palasuberniam, Praneetha, et al.
Publicado: (2021)

Transcriptome analysis of the venom gland of the scorpion Scorpiops jendeki: implication for the evolution of the scorpion venom arsenal
por: Ma, Yibao, et al.
Publicado: (2009)

Transcriptomic Analysis of the Venom Gland and Enzymatic Characterization of the Venom of Phoneutria depilata (Ctenidae) from Colombia
por: Vásquez-Escobar, Julieta, et al.
Publicado: (2022)

Conotoxin Diversity in the Venom Gland Transcriptome of the Magician’s Cone, Pionoconus magus
por: Pardos-Blas, José R., et al.
Publicado: (2019)

Whole Transcriptome of the Venom Gland from Urodacus yaschenkoi Scorpion
por: Luna-Ramírez, Karen, et al.
Publicado: (2015)

Comprehensive analysis of the venom gland transcriptome of the spider Dolomedes fimbriatus
por: Kozlov, Sergey A., et al.
Publicado: (2014)

Genomic and transcriptomic analyses support a silk gland origin of spider venom glands
por: Zhu, Bingyue, et al.
Publicado: (2023)

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing
por: Durban, Jordi, et al.
Publicado: (2011)

Evidence for divergent patterns of local selection driving venom variation in Mojave Rattlesnakes (Crotalus scutulatus)
por: Strickland, Jason L., et al.
Publicado: (2018)

The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function
por: Sim, Andre D., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_ltc3ppc978jsoenb8r4a41diq8