Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing

Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further...

Descripción completa

Detalles Bibliográficos
Autores principales: Dash, Paban Kumar, Pattabiraman, Chitra, Tandel, Kundan, Sharma, Shashi, Kumar, Jyoti S., Siddappa, Shilpa, Gowda, Malali, Krishna, Sudhir, Parida, Manmohan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Viruses
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025927/
https://www.ncbi.nlm.nih.gov/pubmed/29954887
http://dx.doi.org/10.1128/genomeA.00511-18
_version_ 1783336371234013184
author Dash, Paban Kumar
Pattabiraman, Chitra
Tandel, Kundan
Sharma, Shashi
Kumar, Jyoti S.
Siddappa, Shilpa
Gowda, Malali
Krishna, Sudhir
Parida, Manmohan
author_facet Dash, Paban Kumar
Pattabiraman, Chitra
Tandel, Kundan
Sharma, Shashi
Kumar, Jyoti S.
Siddappa, Shilpa
Gowda, Malali
Krishna, Sudhir
Parida, Manmohan
author_sort Dash, Paban Kumar
collection PubMed
description Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further is critical for outbreak preparedness.
format Online
Article
Text
id pubmed-6025927
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-60259272018-07-06 Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing Dash, Paban Kumar Pattabiraman, Chitra Tandel, Kundan Sharma, Shashi Kumar, Jyoti S. Siddappa, Shilpa Gowda, Malali Krishna, Sudhir Parida, Manmohan Genome Announc Viruses Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further is critical for outbreak preparedness. American Society for Microbiology 2018-06-28 /pmc/articles/PMC6025927/ /pubmed/29954887 http://dx.doi.org/10.1128/genomeA.00511-18 Text en Copyright © 2018 Dash et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Viruses
Dash, Paban Kumar
Pattabiraman, Chitra
Tandel, Kundan
Sharma, Shashi
Kumar, Jyoti S.
Siddappa, Shilpa
Gowda, Malali
Krishna, Sudhir
Parida, Manmohan
Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title_full Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title_fullStr Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title_full_unstemmed Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title_short Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
title_sort recovery of five complete influenza a(h1n1)pdm09 genome sequences from the 2015 influenza outbreak in india by metagenomic sequencing
topic Viruses
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025927/
https://www.ncbi.nlm.nih.gov/pubmed/29954887
http://dx.doi.org/10.1128/genomeA.00511-18
work_keys_str_mv AT dashpabankumar recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT pattabiramanchitra recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT tandelkundan recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT sharmashashi recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT kumarjyotis recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT siddappashilpa recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT gowdamalali recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT krishnasudhir recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing
AT paridamanmohan recoveryoffivecompleteinfluenzaah1n1pdm09genomesequencesfromthe2015influenzaoutbreakinindiabymetagenomicsequencing

Ejemplares similares