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An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026215/ https://www.ncbi.nlm.nih.gov/pubmed/29977480 http://dx.doi.org/10.1016/j.csbj.2018.02.001 |
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author | Zafeiris, Dimitrios Rutella, Sergio Ball, Graham Roy |
author_facet | Zafeiris, Dimitrios Rutella, Sergio Ball, Graham Roy |
author_sort | Zafeiris, Dimitrios |
collection | PubMed |
description | The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease types. This review seeks to explore and evaluate an integrated ANN pipeline for biomarker discovery and validation in Alzheimer's disease, the most common form of dementia worldwide with no proven cause and no available cure. The proposed pipeline consists of analysing public data with a categorical and continuous stepwise algorithm and further examination through network inference to predict gene interactions. This methodology can reliably generate novel markers and further examine known ones and can be used to guide future research in Alzheimer's disease. |
format | Online Article Text |
id | pubmed-6026215 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-60262152018-07-05 An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study Zafeiris, Dimitrios Rutella, Sergio Ball, Graham Roy Comput Struct Biotechnol J Short Survey The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease types. This review seeks to explore and evaluate an integrated ANN pipeline for biomarker discovery and validation in Alzheimer's disease, the most common form of dementia worldwide with no proven cause and no available cure. The proposed pipeline consists of analysing public data with a categorical and continuous stepwise algorithm and further examination through network inference to predict gene interactions. This methodology can reliably generate novel markers and further examine known ones and can be used to guide future research in Alzheimer's disease. Research Network of Computational and Structural Biotechnology 2018-02-21 /pmc/articles/PMC6026215/ /pubmed/29977480 http://dx.doi.org/10.1016/j.csbj.2018.02.001 Text en © 2018 Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Short Survey Zafeiris, Dimitrios Rutella, Sergio Ball, Graham Roy An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title | An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title_full | An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title_fullStr | An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title_full_unstemmed | An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title_short | An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study |
title_sort | artificial neural network integrated pipeline for biomarker discovery using alzheimer's disease as a case study |
topic | Short Survey |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026215/ https://www.ncbi.nlm.nih.gov/pubmed/29977480 http://dx.doi.org/10.1016/j.csbj.2018.02.001 |
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