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An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study

The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease...

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Autores principales: Zafeiris, Dimitrios, Rutella, Sergio, Ball, Graham Roy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026215/
https://www.ncbi.nlm.nih.gov/pubmed/29977480
http://dx.doi.org/10.1016/j.csbj.2018.02.001
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author Zafeiris, Dimitrios
Rutella, Sergio
Ball, Graham Roy
author_facet Zafeiris, Dimitrios
Rutella, Sergio
Ball, Graham Roy
author_sort Zafeiris, Dimitrios
collection PubMed
description The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease types. This review seeks to explore and evaluate an integrated ANN pipeline for biomarker discovery and validation in Alzheimer's disease, the most common form of dementia worldwide with no proven cause and no available cure. The proposed pipeline consists of analysing public data with a categorical and continuous stepwise algorithm and further examination through network inference to predict gene interactions. This methodology can reliably generate novel markers and further examine known ones and can be used to guide future research in Alzheimer's disease.
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spelling pubmed-60262152018-07-05 An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study Zafeiris, Dimitrios Rutella, Sergio Ball, Graham Roy Comput Struct Biotechnol J Short Survey The field of machine learning has allowed researchers to generate and analyse vast amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are some of the most commonly used statistical models and have been successful in biomarker discovery studies in multiple disease types. This review seeks to explore and evaluate an integrated ANN pipeline for biomarker discovery and validation in Alzheimer's disease, the most common form of dementia worldwide with no proven cause and no available cure. The proposed pipeline consists of analysing public data with a categorical and continuous stepwise algorithm and further examination through network inference to predict gene interactions. This methodology can reliably generate novel markers and further examine known ones and can be used to guide future research in Alzheimer's disease. Research Network of Computational and Structural Biotechnology 2018-02-21 /pmc/articles/PMC6026215/ /pubmed/29977480 http://dx.doi.org/10.1016/j.csbj.2018.02.001 Text en © 2018 Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Short Survey
Zafeiris, Dimitrios
Rutella, Sergio
Ball, Graham Roy
An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title_full An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title_fullStr An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title_full_unstemmed An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title_short An Artificial Neural Network Integrated Pipeline for Biomarker Discovery Using Alzheimer's Disease as a Case Study
title_sort artificial neural network integrated pipeline for biomarker discovery using alzheimer's disease as a case study
topic Short Survey
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026215/
https://www.ncbi.nlm.nih.gov/pubmed/29977480
http://dx.doi.org/10.1016/j.csbj.2018.02.001
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