Cargando…

GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait

Bayesian models for genomic prediction and association mapping are being increasingly used in genetics analysis of quantitative traits. Given a point estimate of variance components, the popular methods SNP-BLUP and GBLUP result in joint estimates of the effect of all markers on the analyzed trait;...

Descripción completa

Detalles Bibliográficos
Autores principales:	Legarra, Andres, Ricard, Anne, Varona, Luis
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Genetics Society of America 2018
Materias:	Genomic Selection
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6027892/ https://www.ncbi.nlm.nih.gov/pubmed/29748199 http://dx.doi.org/10.1534/g3.118.200336

Ejemplares similares

On the use of GBLUP and its extension for GWAS with additive and epistatic effects
por: Zhang, Jie, et al.
Publicado: (2021)

Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)
por: Dong, Linsong, et al.
Publicado: (2016)

Incorporation of causative quantitative trait nucleotides in single-step GBLUP
por: Fragomeni, Breno O., et al.
Publicado: (2017)

Erratum to: Incorporation of causative quantitative trait nucleotides in single-step GBLUP
por: Fragomeni, Breno O., et al.
Publicado: (2017)

Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP
por: Garcia, Andre, et al.
Publicado: (2022)

Correction: Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP
por: Garcia, Andre, et al.
Publicado: (2023)

Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder
por: Lu, Sheng, et al.
Publicado: (2020)

Validation of models for analysis of ranks in horse breeding evaluation
por: Ricard, Anne, et al.
Publicado: (2010)

Genomic selection models for directional dominance: an example for litter size in pigs
por: Varona, Luis, et al.
Publicado: (2018)

A Variational Bayes Genomic-Enabled Prediction Model with Genotype × Environment Interaction
por: Montesinos-López, Osval A., et al.
Publicado: (2017)

Implication of the order of blending and tuning when computing the genomic relationship matrix in single‐step GBLUP
por: McWhorter, Taylor M., et al.
Publicado: (2022)

Modeling genetic differences of combined broiler chicken populations in single-step GBLUP
por: Bermann, Matias, et al.
Publicado: (2021)

Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle
por: Wang, Xiaoqiao, et al.
Publicado: (2019)

Genomic Prediction Using Multi-trait Weighted GBLUP Accounting for Heterogeneous Variances and Covariances Across the Genome
por: Karaman, Emre, et al.
Publicado: (2018)

Validation of single‐step GBLUP genomic predictions from threshold models using the linear regression method: An application in chicken mortality
por: Bermann, Matias, et al.
Publicado: (2020)

Single-Step GBLUP and GWAS Analyses Suggests Implementation of Unweighted Two Trait Approach for Heat Stress in Swine
por: Dodd, Gabriella Roby, et al.
Publicado: (2022)

An efficient exact method to obtain GBLUP and single-step GBLUP when the genomic relationship matrix is singular
por: Fernando, Rohan L., et al.
Publicado: (2016)

GIBBSTHUR: Software for Estimating Variance Components and Predicting Breeding Values for Ranking Traits Based on a Thurstonian Model
por: Varona, Luis, et al.
Publicado: (2020)

Inclusion of Dominance Effects in the Multivariate GBLUP Model
por: dos Santos, Jhonathan Pedroso Rigal, et al.
Publicado: (2016)

An Upper Bound for Accuracy of Prediction Using GBLUP
por: Karaman, Emre, et al.
Publicado: (2016)

deepGBLUP: joint deep learning networks and GBLUP framework for accurate genomic prediction of complex traits in Korean native cattle
por: Lee, Hyo-Jun, et al.
Publicado: (2023)

On the Employment of the Horse-Chestnut in Pulmonary Emphysema in the Horse
por: Benjamin, M. H.
Publicado: (1895)

Multimarker Screening of Oxidative Stress in Aging
por: Syslová, Kamila, et al.
Publicado: (2014)

Multimarker Approach in Cardiovascular Risk Prediction
por: Ikonomidis, Ignatios, et al.
Publicado: (2009)

Notes on Arab Horses
por: Hoskins, Franklin E.
Publicado: (1903)

The “Horse Industry” in Kansas
Publicado: (1895)

Aphthæ, or Vesicular Stomatitis of the Horse
por: Hutcheon, D.
Publicado: (1898)

Vomition in the Horse—Ejection of Ascarides
por: Wolstenholme, J. B.
Publicado: (1894)

Identification and Functional Annotation of Genes Related to Horses’ Performance: From GWAS to Post-GWAS
por: Littiere, Thayssa O., et al.
Publicado: (2020)

Horse-Back Riding and Pulmonary Calisthenics
Publicado: (1884)

How to Tell a Horse’s Age
Publicado: (1888)

Country Almost Cleared of Salable Horses
Publicado: (1900)

An Example of the Concurrent Development of Cancer and Tubercle
por: Sibley, Septimus Wm.
Publicado: (1854)

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS
por: Zhang, Xinyue, et al.
Publicado: (2016)

Bayes factors for detection of Quantitative Trait Loci
por: Varona, Luis, et al.
Publicado: (2001)

Sidewinder gait in horses
por: Aleman, Monica, et al.
Publicado: (2020)

Ear Vertigo in the Horse, Induced by Aspergillus Nigricans
por: Goodall, Thos. B.
Publicado: (1892)

Impact of Genotype Imputation on the Performance of GBLUP and Bayesian Methods for Genomic Prediction
por: Chen, Liuhong, et al.
Publicado: (2014)

Comparison of the Efficiency of BLUP and GBLUP in Genomic Prediction of Immune Traits in Chickens
por: Zhang, Jin, et al.
Publicado: (2020)

Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria
por: Vandenplas, Jeremie, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_pogr2kofbc4beggvo8sadi1vb9