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Hydrophobic Collapse in N-Methylacetamide–Water Mixtures

[Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into th...

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Detalles Bibliográficos
Autores principales: Salamatova, Evgeniia, Cunha, Ana V., Bloem, Robbert, Roeters, Steven J., Woutersen, Sander, Jansen, Thomas L. C., Pshenichnikov, Maxim S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028151/
https://www.ncbi.nlm.nih.gov/pubmed/29425450
http://dx.doi.org/10.1021/acs.jpca.8b00276
Descripción
Sumario:[Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into the molecular structures in the mixture. N-Methylacetamide and water molecules tend to form clusters with “frozen” amide I dynamics. This is driven by a hydrophobic collapse as the methyl groups of the N-methylacetamide molecules cluster in the presence of water. Since the studied system can be considered as a simplified model for the backbone of proteins, the present study forms a convenient basis for understanding the structural and vibrational dynamics in proteins. It is particularly interesting to find out that a hydrophobic collapse as the one driving protein folding is observed in such a simple system.