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Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
[Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into th...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028151/ https://www.ncbi.nlm.nih.gov/pubmed/29425450 http://dx.doi.org/10.1021/acs.jpca.8b00276 |
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author | Salamatova, Evgeniia Cunha, Ana V. Bloem, Robbert Roeters, Steven J. Woutersen, Sander Jansen, Thomas L. C. Pshenichnikov, Maxim S. |
author_facet | Salamatova, Evgeniia Cunha, Ana V. Bloem, Robbert Roeters, Steven J. Woutersen, Sander Jansen, Thomas L. C. Pshenichnikov, Maxim S. |
author_sort | Salamatova, Evgeniia |
collection | PubMed |
description | [Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into the molecular structures in the mixture. N-Methylacetamide and water molecules tend to form clusters with “frozen” amide I dynamics. This is driven by a hydrophobic collapse as the methyl groups of the N-methylacetamide molecules cluster in the presence of water. Since the studied system can be considered as a simplified model for the backbone of proteins, the present study forms a convenient basis for understanding the structural and vibrational dynamics in proteins. It is particularly interesting to find out that a hydrophobic collapse as the one driving protein folding is observed in such a simple system. |
format | Online Article Text |
id | pubmed-6028151 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-60281512018-07-03 Hydrophobic Collapse in N-Methylacetamide–Water Mixtures Salamatova, Evgeniia Cunha, Ana V. Bloem, Robbert Roeters, Steven J. Woutersen, Sander Jansen, Thomas L. C. Pshenichnikov, Maxim S. J Phys Chem A [Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into the molecular structures in the mixture. N-Methylacetamide and water molecules tend to form clusters with “frozen” amide I dynamics. This is driven by a hydrophobic collapse as the methyl groups of the N-methylacetamide molecules cluster in the presence of water. Since the studied system can be considered as a simplified model for the backbone of proteins, the present study forms a convenient basis for understanding the structural and vibrational dynamics in proteins. It is particularly interesting to find out that a hydrophobic collapse as the one driving protein folding is observed in such a simple system. American Chemical Society 2018-02-09 2018-03-08 /pmc/articles/PMC6028151/ /pubmed/29425450 http://dx.doi.org/10.1021/acs.jpca.8b00276 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Salamatova, Evgeniia Cunha, Ana V. Bloem, Robbert Roeters, Steven J. Woutersen, Sander Jansen, Thomas L. C. Pshenichnikov, Maxim S. Hydrophobic Collapse in N-Methylacetamide–Water Mixtures |
title | Hydrophobic Collapse in N-Methylacetamide–Water
Mixtures |
title_full | Hydrophobic Collapse in N-Methylacetamide–Water
Mixtures |
title_fullStr | Hydrophobic Collapse in N-Methylacetamide–Water
Mixtures |
title_full_unstemmed | Hydrophobic Collapse in N-Methylacetamide–Water
Mixtures |
title_short | Hydrophobic Collapse in N-Methylacetamide–Water
Mixtures |
title_sort | hydrophobic collapse in n-methylacetamide–water
mixtures |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028151/ https://www.ncbi.nlm.nih.gov/pubmed/29425450 http://dx.doi.org/10.1021/acs.jpca.8b00276 |
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