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Hydrophobic Collapse in N-Methylacetamide–Water Mixtures

[Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into th...

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Autores principales: Salamatova, Evgeniia, Cunha, Ana V., Bloem, Robbert, Roeters, Steven J., Woutersen, Sander, Jansen, Thomas L. C., Pshenichnikov, Maxim S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028151/
https://www.ncbi.nlm.nih.gov/pubmed/29425450
http://dx.doi.org/10.1021/acs.jpca.8b00276
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author Salamatova, Evgeniia
Cunha, Ana V.
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Jansen, Thomas L. C.
Pshenichnikov, Maxim S.
author_facet Salamatova, Evgeniia
Cunha, Ana V.
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Jansen, Thomas L. C.
Pshenichnikov, Maxim S.
author_sort Salamatova, Evgeniia
collection PubMed
description [Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into the molecular structures in the mixture. N-Methylacetamide and water molecules tend to form clusters with “frozen” amide I dynamics. This is driven by a hydrophobic collapse as the methyl groups of the N-methylacetamide molecules cluster in the presence of water. Since the studied system can be considered as a simplified model for the backbone of proteins, the present study forms a convenient basis for understanding the structural and vibrational dynamics in proteins. It is particularly interesting to find out that a hydrophobic collapse as the one driving protein folding is observed in such a simple system.
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spelling pubmed-60281512018-07-03 Hydrophobic Collapse in N-Methylacetamide–Water Mixtures Salamatova, Evgeniia Cunha, Ana V. Bloem, Robbert Roeters, Steven J. Woutersen, Sander Jansen, Thomas L. C. Pshenichnikov, Maxim S. J Phys Chem A [Image: see text] Aqueous N-methylacetamide solutions were investigated by polarization-resolved pump–probe and 2D infrared spectroscopy (2D IR), using the amide I mode as a reporter. The 2D IR results are compared with molecular dynamics simulations and spectral calculations to gain insight into the molecular structures in the mixture. N-Methylacetamide and water molecules tend to form clusters with “frozen” amide I dynamics. This is driven by a hydrophobic collapse as the methyl groups of the N-methylacetamide molecules cluster in the presence of water. Since the studied system can be considered as a simplified model for the backbone of proteins, the present study forms a convenient basis for understanding the structural and vibrational dynamics in proteins. It is particularly interesting to find out that a hydrophobic collapse as the one driving protein folding is observed in such a simple system. American Chemical Society 2018-02-09 2018-03-08 /pmc/articles/PMC6028151/ /pubmed/29425450 http://dx.doi.org/10.1021/acs.jpca.8b00276 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Salamatova, Evgeniia
Cunha, Ana V.
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Jansen, Thomas L. C.
Pshenichnikov, Maxim S.
Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title_full Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title_fullStr Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title_full_unstemmed Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title_short Hydrophobic Collapse in N-Methylacetamide–Water Mixtures
title_sort hydrophobic collapse in n-methylacetamide–water mixtures
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028151/
https://www.ncbi.nlm.nih.gov/pubmed/29425450
http://dx.doi.org/10.1021/acs.jpca.8b00276
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