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A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India

Rice is a staple food for the people of Asia that supplies more than 50% of the food energy globally. It is widely accepted that the crop domestication process has left behind substantial useful genetic diversity in their wild progenitor species that has huge potential for developing crop varieties...

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Detalles Bibliográficos
Autores principales: Tripathy, Kabita, Singh, Balwant, Singh, Nisha, Rai, Vandna, Misra, Gauri, Singh, Nagendra Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030808/
https://www.ncbi.nlm.nih.gov/pubmed/29982559
http://dx.doi.org/10.1093/database/bay058
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author Tripathy, Kabita
Singh, Balwant
Singh, Nisha
Rai, Vandna
Misra, Gauri
Singh, Nagendra Kumar
author_facet Tripathy, Kabita
Singh, Balwant
Singh, Nisha
Rai, Vandna
Misra, Gauri
Singh, Nagendra Kumar
author_sort Tripathy, Kabita
collection PubMed
description Rice is a staple food for the people of Asia that supplies more than 50% of the food energy globally. It is widely accepted that the crop domestication process has left behind substantial useful genetic diversity in their wild progenitor species that has huge potential for developing crop varieties with enhanced resistance to an array of biotic and abiotic stresses. In this context, Oryza rufipogon, Oryza nivara and their intermediate types wild rice germplasm/s collected from diverse agro-climatic regions would provide a rich repository of genes and alleles that could be utilized for rice improvement using genomics-assisted breeding. Here we present a database of detailed information on 614 such diverse wild rice accessions collected from different agro-climatic zones of India, including 46 different morphological descriptors, complete passport data and DNA fingerprints. The information has been stored in a web-based database entitled ‘Indian Wild Rice (IWR) Database’. The information provided in the IWR Database will be useful for the rice geneticists and breeders for improvement of rice cultivars for yield, quality and resilience to climate change. Database URL: http://nksingh.nationalprof.in: 8080/iwrdb/index.jsp
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spelling pubmed-60308082018-07-10 A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India Tripathy, Kabita Singh, Balwant Singh, Nisha Rai, Vandna Misra, Gauri Singh, Nagendra Kumar Database (Oxford) Original Article Rice is a staple food for the people of Asia that supplies more than 50% of the food energy globally. It is widely accepted that the crop domestication process has left behind substantial useful genetic diversity in their wild progenitor species that has huge potential for developing crop varieties with enhanced resistance to an array of biotic and abiotic stresses. In this context, Oryza rufipogon, Oryza nivara and their intermediate types wild rice germplasm/s collected from diverse agro-climatic regions would provide a rich repository of genes and alleles that could be utilized for rice improvement using genomics-assisted breeding. Here we present a database of detailed information on 614 such diverse wild rice accessions collected from different agro-climatic zones of India, including 46 different morphological descriptors, complete passport data and DNA fingerprints. The information has been stored in a web-based database entitled ‘Indian Wild Rice (IWR) Database’. The information provided in the IWR Database will be useful for the rice geneticists and breeders for improvement of rice cultivars for yield, quality and resilience to climate change. Database URL: http://nksingh.nationalprof.in: 8080/iwrdb/index.jsp Oxford University Press 2018-07-02 /pmc/articles/PMC6030808/ /pubmed/29982559 http://dx.doi.org/10.1093/database/bay058 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Tripathy, Kabita
Singh, Balwant
Singh, Nisha
Rai, Vandna
Misra, Gauri
Singh, Nagendra Kumar
A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title_full A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title_fullStr A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title_full_unstemmed A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title_short A database of wild rice germplasm of Oryza rufipogon species complex from different agro-climatic zones of India
title_sort database of wild rice germplasm of oryza rufipogon species complex from different agro-climatic zones of india
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030808/
https://www.ncbi.nlm.nih.gov/pubmed/29982559
http://dx.doi.org/10.1093/database/bay058
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