Cargando…

Identifying frequent patterns in biochemical reaction networks: a workflow

Computational models in biology encode molecular and cell biological processes. Many of these models can be represented as biochemical reaction networks. Studying such networks, one is mostly interested in systems that share similar reactions and mechanisms. Typical goals of an investigation thus in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030809/ https://www.ncbi.nlm.nih.gov/pubmed/29992320 http://dx.doi.org/10.1093/database/bay051

Ejemplares similares

Combining computational models, semantic annotations and simulation experiments in a graph database
por: Henkel, Ron, et al.
Publicado: (2015)

Annotation-based feature extraction from sets of SBML models
por: Alm, Rebekka, et al.
Publicado: (2015)

Exploring the evolution of biochemical models at the network level
por: Gebhardt, Tom, et al.
Publicado: (2022)

An algorithm to detect and communicate the differences in computational models describing biological systems
por: Scharm, Martin, et al.
Publicado: (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology
por: Scharm, Martin, et al.
Publicado: (2016)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation
por: Touré, Vasundra, et al.
Publicado: (2018)

Notions of similarity for systems biology models
por: Henkel, Ron, et al.
Publicado: (2016)

Notions of similarity for systems biology models
por: Henkel, Ron, et al.
Publicado: (2017)

Ranked retrieval of Computational Biology models
por: Henkel, Ron, et al.
Publicado: (2010)

Evolution of computational models in BioModels Database and the Physiome Model Repository
por: Scharm, Martin, et al.
Publicado: (2018)

Approaches and Criteria for Provenance in Biomedical Data Sets and Workflows: Protocol for a Scoping Review
por: Gierend, Kerstin, et al.
Publicado: (2021)

Perspectives in business informatics research: 18th international conference, BIR 219, Katowice, Poland, September 23-25, 219, proceedings
por: Pańkowska, Małgorzata, et al.
Publicado: (2019)

Supporting Early Phases of Digital Twin Development with Enterprise Modeling and Capability Management: Requirements from Two Industrial Cases
por: Sandkuhl, Kurt, et al.
Publicado: (2020)

STON: exploring biological pathways using the SBGN standard and graph databases
por: Touré, Vasundra, et al.
Publicado: (2016)

Cooperative gene regulation by microRNA pairs and their identification using a computational workflow
por: Schmitz, Ulf, et al.
Publicado: (2014)

A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos
por: Scharm, Martin, et al.
Publicado: (2016)

Workflow patterns: the definitive guide
por: Russell, Nick, et al.
Publicado: (2016)

Frequent pattern mining in multidimensional organizational networks
por: Gadár, László, et al.
Publicado: (2019)

Caplacizumab: frequent local skin reactions
por: Kaufeld, Jessica, et al.
Publicado: (2020)

An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions
por: Arya, Aayush, et al.
Publicado: (2022)

Semigroup models for biochemical reaction networks
por: Loutchko, Dimitri
Publicado: (2023)

Overview of frequent pattern mining
por: Ott, Jurg, et al.
Publicado: (2022)

The Mining Algorithm of Maximum Frequent Itemsets Based on Frequent Pattern Tree
por: Mi, Xifeng
Publicado: (2022)

Alternative workflows for identifying transnational missing persons
por: Kaplan, Molly A., et al.
Publicado: (2023)

Stereoselective Bacterial Metabolism of Antibiotics in Environmental Bacteria – A Novel Biochemical Workflow
por: Elder, Felicity C. T., et al.
Publicado: (2021)

The role of theory and modeling in medical research
por: Wolkenhauer, Olaf
Publicado: (2013)

Why model?
por: Wolkenhauer, Olaf
Publicado: (2014)

Pushing limits by embracing complexity
por: Wolkenhauer, Olaf
Publicado: (2014)

Parameter Identifiability and Sensitivity Analysis Predict Targets for Enhancement of STAT1 Activity in Pancreatic Cancer and Stellate Cells
por: Rateitschak, Katja, et al.
Publicado: (2012)

Understanding microRNA-mediated gene regulatory networks through mathematical modelling
por: Lai, Xin, et al.
Publicado: (2016)

Characterizing Multistationarity Regimes in Biochemical Reaction Networks
por: Otero-Muras, Irene, et al.
Publicado: (2012)

Reconciliation of metabolites and biochemical reactions for metabolic networks
por: Bernard, Thomas, et al.
Publicado: (2014)

Universal structures for adaptation in biochemical reaction networks
por: Araujo, Robyn P., et al.
Publicado: (2023)

Quantifying Information of Dynamical Biochemical Reaction Networks
por: Jiang, Zhiyuan, et al.
Publicado: (2023)

Applying the FAIR4Health Solution to Identify Multimorbidity Patterns and Their Association with Mortality through a Frequent Pattern Growth Association Algorithm
por: Carmona-Pírez, Jonás, et al.
Publicado: (2022)

Identifying the forces driving frequent change in PMOs
por: Aubry, Monique, et al.
Publicado: (2011)

When order sets do not align with clinician workflow: assessing practice patterns in the electronic health record
por: Li, Ron C, et al.
Publicado: (2019)

Identifying Spatial Patterns and Ecosystem Service Delivery of Nature-Based Solutions
por: Guerrero, Paulina, et al.
Publicado: (2022)

Reduction of dynamical biochemical reactions networks in computational biology
por: Radulescu, O., et al.
Publicado: (2012)

Correction: Characterizing Multistationarity Regimes in Biochemical Reaction Networks
por: Otero-Muras, Irene, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_rv385n4ki5b5qopbqkvrft5q00