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Freiburg RNA tools: a central online resource for RNA-focused research and teaching
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homo...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030932/ https://www.ncbi.nlm.nih.gov/pubmed/29788132 http://dx.doi.org/10.1093/nar/gky329 |
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author | Raden, Martin Ali, Syed M Alkhnbashi, Omer S Busch, Anke Costa, Fabrizio Davis, Jason A Eggenhofer, Florian Gelhausen, Rick Georg, Jens Heyne, Steffen Hiller, Michael Kundu, Kousik Kleinkauf, Robert Lott, Steffen C Mohamed, Mostafa M Mattheis, Alexander Miladi, Milad Richter, Andreas S Will, Sebastian Wolff, Joachim Wright, Patrick R Backofen, Rolf |
author_facet | Raden, Martin Ali, Syed M Alkhnbashi, Omer S Busch, Anke Costa, Fabrizio Davis, Jason A Eggenhofer, Florian Gelhausen, Rick Georg, Jens Heyne, Steffen Hiller, Michael Kundu, Kousik Kleinkauf, Robert Lott, Steffen C Mohamed, Mostafa M Mattheis, Alexander Miladi, Milad Richter, Andreas S Will, Sebastian Wolff, Joachim Wright, Patrick R Backofen, Rolf |
author_sort | Raden, Martin |
collection | PubMed |
description | The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de. |
format | Online Article Text |
id | pubmed-6030932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-60309322018-07-10 Freiburg RNA tools: a central online resource for RNA-focused research and teaching Raden, Martin Ali, Syed M Alkhnbashi, Omer S Busch, Anke Costa, Fabrizio Davis, Jason A Eggenhofer, Florian Gelhausen, Rick Georg, Jens Heyne, Steffen Hiller, Michael Kundu, Kousik Kleinkauf, Robert Lott, Steffen C Mohamed, Mostafa M Mattheis, Alexander Miladi, Milad Richter, Andreas S Will, Sebastian Wolff, Joachim Wright, Patrick R Backofen, Rolf Nucleic Acids Res Web Server Issue The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de. Oxford University Press 2018-07-02 2018-05-21 /pmc/articles/PMC6030932/ /pubmed/29788132 http://dx.doi.org/10.1093/nar/gky329 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Raden, Martin Ali, Syed M Alkhnbashi, Omer S Busch, Anke Costa, Fabrizio Davis, Jason A Eggenhofer, Florian Gelhausen, Rick Georg, Jens Heyne, Steffen Hiller, Michael Kundu, Kousik Kleinkauf, Robert Lott, Steffen C Mohamed, Mostafa M Mattheis, Alexander Miladi, Milad Richter, Andreas S Will, Sebastian Wolff, Joachim Wright, Patrick R Backofen, Rolf Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title | Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title_full | Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title_fullStr | Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title_full_unstemmed | Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title_short | Freiburg RNA tools: a central online resource for RNA-focused research and teaching |
title_sort | freiburg rna tools: a central online resource for rna-focused research and teaching |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030932/ https://www.ncbi.nlm.nih.gov/pubmed/29788132 http://dx.doi.org/10.1093/nar/gky329 |
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