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Freiburg RNA tools: a central online resource for RNA-focused research and teaching

The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homo...

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Autores principales: Raden, Martin, Ali, Syed M, Alkhnbashi, Omer S, Busch, Anke, Costa, Fabrizio, Davis, Jason A, Eggenhofer, Florian, Gelhausen, Rick, Georg, Jens, Heyne, Steffen, Hiller, Michael, Kundu, Kousik, Kleinkauf, Robert, Lott, Steffen C, Mohamed, Mostafa M, Mattheis, Alexander, Miladi, Milad, Richter, Andreas S, Will, Sebastian, Wolff, Joachim, Wright, Patrick R, Backofen, Rolf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030932/
https://www.ncbi.nlm.nih.gov/pubmed/29788132
http://dx.doi.org/10.1093/nar/gky329
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author Raden, Martin
Ali, Syed M
Alkhnbashi, Omer S
Busch, Anke
Costa, Fabrizio
Davis, Jason A
Eggenhofer, Florian
Gelhausen, Rick
Georg, Jens
Heyne, Steffen
Hiller, Michael
Kundu, Kousik
Kleinkauf, Robert
Lott, Steffen C
Mohamed, Mostafa M
Mattheis, Alexander
Miladi, Milad
Richter, Andreas S
Will, Sebastian
Wolff, Joachim
Wright, Patrick R
Backofen, Rolf
author_facet Raden, Martin
Ali, Syed M
Alkhnbashi, Omer S
Busch, Anke
Costa, Fabrizio
Davis, Jason A
Eggenhofer, Florian
Gelhausen, Rick
Georg, Jens
Heyne, Steffen
Hiller, Michael
Kundu, Kousik
Kleinkauf, Robert
Lott, Steffen C
Mohamed, Mostafa M
Mattheis, Alexander
Miladi, Milad
Richter, Andreas S
Will, Sebastian
Wolff, Joachim
Wright, Patrick R
Backofen, Rolf
author_sort Raden, Martin
collection PubMed
description The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.
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spelling pubmed-60309322018-07-10 Freiburg RNA tools: a central online resource for RNA-focused research and teaching Raden, Martin Ali, Syed M Alkhnbashi, Omer S Busch, Anke Costa, Fabrizio Davis, Jason A Eggenhofer, Florian Gelhausen, Rick Georg, Jens Heyne, Steffen Hiller, Michael Kundu, Kousik Kleinkauf, Robert Lott, Steffen C Mohamed, Mostafa M Mattheis, Alexander Miladi, Milad Richter, Andreas S Will, Sebastian Wolff, Joachim Wright, Patrick R Backofen, Rolf Nucleic Acids Res Web Server Issue The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de. Oxford University Press 2018-07-02 2018-05-21 /pmc/articles/PMC6030932/ /pubmed/29788132 http://dx.doi.org/10.1093/nar/gky329 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Raden, Martin
Ali, Syed M
Alkhnbashi, Omer S
Busch, Anke
Costa, Fabrizio
Davis, Jason A
Eggenhofer, Florian
Gelhausen, Rick
Georg, Jens
Heyne, Steffen
Hiller, Michael
Kundu, Kousik
Kleinkauf, Robert
Lott, Steffen C
Mohamed, Mostafa M
Mattheis, Alexander
Miladi, Milad
Richter, Andreas S
Will, Sebastian
Wolff, Joachim
Wright, Patrick R
Backofen, Rolf
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title_full Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title_fullStr Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title_full_unstemmed Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title_short Freiburg RNA tools: a central online resource for RNA-focused research and teaching
title_sort freiburg rna tools: a central online resource for rna-focused research and teaching
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030932/
https://www.ncbi.nlm.nih.gov/pubmed/29788132
http://dx.doi.org/10.1093/nar/gky329
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