Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.o...

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Detalles Bibliográficos
Autores principales: Blin, Kai, Wohlleben, Wolfgang, Weber, Tilmann
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Web Server Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030941/
https://www.ncbi.nlm.nih.gov/pubmed/29722870
http://dx.doi.org/10.1093/nar/gky321
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author Blin, Kai
Wohlleben, Wolfgang
Weber, Tilmann
author_facet Blin, Kai
Wohlleben, Wolfgang
Weber, Tilmann
author_sort Blin, Kai
collection PubMed
description Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.
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spelling pubmed-60309412018-07-10 Patscanui: an intuitive web interface for searching patterns in DNA and protein data Blin, Kai Wohlleben, Wolfgang Weber, Tilmann Nucleic Acids Res Web Server Issue Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest. Oxford University Press 2018-07-02 2018-05-02 /pmc/articles/PMC6030941/ /pubmed/29722870 http://dx.doi.org/10.1093/nar/gky321 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Blin, Kai
Wohlleben, Wolfgang
Weber, Tilmann
Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title_full Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title_fullStr Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title_full_unstemmed Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title_short Patscanui: an intuitive web interface for searching patterns in DNA and protein data
title_sort patscanui: an intuitive web interface for searching patterns in dna and protein data
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030941/
https://www.ncbi.nlm.nih.gov/pubmed/29722870
http://dx.doi.org/10.1093/nar/gky321
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