Cargando…

bioBakery: a meta’omic analysis environment

SUMMARY: bioBakery is a meta’omic analysis environment and collection of individual software tools with the capacity to process raw shotgun sequencing data into actionable microbial community feature profiles, summary reports, and publication-ready figures. It includes a collection of pre-configured...

Descripción completa

Detalles Bibliográficos
Autores principales:	McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030947/ https://www.ncbi.nlm.nih.gov/pubmed/29194469 http://dx.doi.org/10.1093/bioinformatics/btx754

Ejemplares similares

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
por: Beghini, Francesco, et al.
Publicado: (2021)

Computational meta'omics for microbial community studies
por: Segata, Nicola, et al.
Publicado: (2013)

Meta’omics: Challenges and Applications
por: Fulci, Valerio
Publicado: (2022)

High-sensitivity pattern discovery in large, paired multiomic datasets
por: Ghazi, Andrew R, et al.
Publicado: (2022)

A reproducible approach to high-throughput biological data acquisition and integration
por: Börnigen, Daniela, et al.
Publicado: (2015)

Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice
por: Yasuda, Koji, et al.
Publicado: (2017)

Multivariable association discovery in population-scale meta-omics studies
por: Mallick, Himel, et al.
Publicado: (2021)

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
por: Segata, Nicola, et al.
Publicado: (2013)

Meta’omic analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism
por: Scheiman, Jonathan, et al.
Publicado: (2019)

Metagenomic microbial community profiling using unique clade-specific marker genes
por: Segata, Nicola, et al.
Publicado: (2012)

Species-level functional profiling of metagenomes and metatranscriptomes
por: Franzosa, Eric A., et al.
Publicado: (2018)

Metaomics in Clinical Laboratory: Potential Driving Force for Innovative Disease Diagnosis
por: Wang, Liang, et al.
Publicado: (2022)

The healthy human microbiome
por: Lloyd-Price, Jason, et al.
Publicado: (2016)

Metagenomic biomarker discovery and explanation
por: Segata, Nicola, et al.
Publicado: (2011)

Experimental design and quantitative analysis of microbial community multiomics
por: Mallick, Himel, et al.
Publicado: (2017)

Integrating Dietary Data into Microbiome Studies: A Step Forward for Nutri-Metaomics
por: Yáñez, Francisca, et al.
Publicado: (2021)

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor
por: Ramos, Marcel, et al.
Publicado: (2023)

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
por: Kaminski, James, et al.
Publicado: (2015)

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets
por: Koren, Omry, et al.
Publicado: (2013)

Functional profiling of the gut microbiome in disease-associated inflammation
por: Börnigen, Daniela, et al.
Publicado: (2013)

Bakery : technology and engineering
por: Matz, Samuel A.
Publicado: (1960)

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
por: Segata, Nicola, et al.
Publicado: (2012)

Chapter 12: Human Microbiome Analysis
por: Morgan, Xochitl C., et al.
Publicado: (2012)

The Sleipnir library for computational functional genomics
por: Huttenhower, Curtis, et al.
Publicado: (2008)

OmicsViz: Cytoscape plug-in for visualizing omics data across species
por: Xia, Tian, et al.
Publicado: (2008)

OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
por: Xia, Tian, et al.
Publicado: (2010)

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies
por: Segata, Nicola, et al.
Publicado: (2011)

integrOmics: an R package to unravel relationships between two omics datasets
por: Lê Cao, Kim-Anh, et al.
Publicado: (2009)

OmicsEV: a tool for comprehensive quality evaluation of omics data tables
por: Wen, Bo, et al.
Publicado: (2022)

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues
por: Waldron, Levi, et al.
Publicado: (2012)

Visual Omics: a web-based platform for omics data analysis and visualization with rich graph-tuning capabilities
por: Li, Heng, et al.
Publicado: (2022)

The BioPAX Validator
por: Rodchenkov, Igor, et al.
Publicado: (2013)

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment
por: Hsu, Tiffany, et al.
Publicado: (2016)

WIlsON: Web-based Interactive Omics VisualizatioN
por: Schultheis, Hendrik, et al.
Publicado: (2019)

Grimon: graphical interface to visualize multi-omics networks
por: Kanai, Masahiro, et al.
Publicado: (2018)

PyIOmica: longitudinal omics analysis and trend identification
por: Domanskyi, Sergii, et al.
Publicado: (2020)

SGI: automatic clinical subgroup identification in omics datasets
por: Buyukozkan, Mustafa, et al.
Publicado: (2021)

MOSS: multi-omic integration with sparse value decomposition
por: Gonzalez-Reymundez, Agustin, et al.
Publicado: (2022)

dRFEtools: dynamic recursive feature elimination for omics
por: Benjamin, Kynon J M, et al.
Publicado: (2023)

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions
por: Geistlinger, Ludwig, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_762k62kjcao4luj18kmt7517ab