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iPath3.0: interactive pathways explorer v3

iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic...

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Detalles Bibliográficos
Autores principales: Darzi, Youssef, Letunic, Ivica, Bork, Peer, Yamada, Takuji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031023/
https://www.ncbi.nlm.nih.gov/pubmed/29718427
http://dx.doi.org/10.1093/nar/gky299
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author Darzi, Youssef
Letunic, Ivica
Bork, Peer
Yamada, Takuji
author_facet Darzi, Youssef
Letunic, Ivica
Bork, Peer
Yamada, Takuji
author_sort Darzi, Youssef
collection PubMed
description iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow.
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spelling pubmed-60310232018-07-10 iPath3.0: interactive pathways explorer v3 Darzi, Youssef Letunic, Ivica Bork, Peer Yamada, Takuji Nucleic Acids Res Web Server Issue iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow. Oxford University Press 2018-07-02 2018-04-30 /pmc/articles/PMC6031023/ /pubmed/29718427 http://dx.doi.org/10.1093/nar/gky299 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Darzi, Youssef
Letunic, Ivica
Bork, Peer
Yamada, Takuji
iPath3.0: interactive pathways explorer v3
title iPath3.0: interactive pathways explorer v3
title_full iPath3.0: interactive pathways explorer v3
title_fullStr iPath3.0: interactive pathways explorer v3
title_full_unstemmed iPath3.0: interactive pathways explorer v3
title_short iPath3.0: interactive pathways explorer v3
title_sort ipath3.0: interactive pathways explorer v3
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031023/
https://www.ncbi.nlm.nih.gov/pubmed/29718427
http://dx.doi.org/10.1093/nar/gky299
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