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iPath3.0: interactive pathways explorer v3
iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031023/ https://www.ncbi.nlm.nih.gov/pubmed/29718427 http://dx.doi.org/10.1093/nar/gky299 |
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author | Darzi, Youssef Letunic, Ivica Bork, Peer Yamada, Takuji |
author_facet | Darzi, Youssef Letunic, Ivica Bork, Peer Yamada, Takuji |
author_sort | Darzi, Youssef |
collection | PubMed |
description | iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow. |
format | Online Article Text |
id | pubmed-6031023 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-60310232018-07-10 iPath3.0: interactive pathways explorer v3 Darzi, Youssef Letunic, Ivica Bork, Peer Yamada, Takuji Nucleic Acids Res Web Server Issue iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow. Oxford University Press 2018-07-02 2018-04-30 /pmc/articles/PMC6031023/ /pubmed/29718427 http://dx.doi.org/10.1093/nar/gky299 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Darzi, Youssef Letunic, Ivica Bork, Peer Yamada, Takuji iPath3.0: interactive pathways explorer v3 |
title | iPath3.0: interactive pathways explorer v3 |
title_full | iPath3.0: interactive pathways explorer v3 |
title_fullStr | iPath3.0: interactive pathways explorer v3 |
title_full_unstemmed | iPath3.0: interactive pathways explorer v3 |
title_short | iPath3.0: interactive pathways explorer v3 |
title_sort | ipath3.0: interactive pathways explorer v3 |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031023/ https://www.ncbi.nlm.nih.gov/pubmed/29718427 http://dx.doi.org/10.1093/nar/gky299 |
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