Cargando…

RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins

RepeatsDB-lite (http://protein.bio.unipd.it/repeatsdb-lite) is a web server for the prediction of repetitive structural elements and units in tandem repeat (TR) proteins. TRs are a widespread but poorly annotated class of non-globular proteins carrying heterogeneous functions. RepeatsDB-lite extends...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hirsh, Layla, Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C E
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031040/ https://www.ncbi.nlm.nih.gov/pubmed/29746699 http://dx.doi.org/10.1093/nar/gky360

Ejemplares similares

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures
por: Paladin, Lisanna, et al.
Publicado: (2017)

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures
por: Paladin, Lisanna, et al.
Publicado: (2017)

RepeatsDB: a database of tandem repeat protein structures
por: Di Domenico, Tomás, et al.
Publicado: (2014)

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures
por: Paladin, Lisanna, et al.
Publicado: (2020)

SODA: prediction of protein solubility from disorder and aggregation propensity
por: Paladin, Lisanna, et al.
Publicado: (2017)

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
por: Jarnot, Patryk, et al.
Publicado: (2020)

The RING 2.0 web server for high quality residue interaction networks
por: Piovesan, Damiano, et al.
Publicado: (2016)

FAIR: A server for internal sequence repeats
por: Senthilkumar, Ramaswamy, et al.
Publicado: (2010)

INGA 2.0: improving protein function prediction for the dark proteome
por: Piovesan, Damiano, et al.
Publicado: (2019)

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
por: Zhang, Han, et al.
Publicado: (2018)

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity
por: Piovesan, Damiano, et al.
Publicado: (2015)

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions
por: Chen, Shengquan, et al.
Publicado: (2021)

Companion: a web server for annotation and analysis of parasite genomes
por: Steinbiss, Sascha, et al.
Publicado: (2016)

PANNZER2: a rapid functional annotation web server
por: Törönen, Petri, et al.
Publicado: (2018)

AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis
por: Geoffroy, Véronique, et al.
Publicado: (2021)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
por: Del Conte, Alessio, et al.
Publicado: (2023)

RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles
por: Clementel, Damiano, et al.
Publicado: (2022)

FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins
por: Hatos, Andras, et al.
Publicado: (2023)

PhytoTypeDB: a database of plant protein inter-cultivar variability and function
por: Necci, Marco, et al.
Publicado: (2018)

WebFARM: web server for finite automated restriction mapping
por: Singh, Tiratha Raj
Publicado: (2010)

PathwAX: a web server for network crosstalk based pathway annotation
por: Ogris, Christoph, et al.
Publicado: (2016)

IWS: Integrated web server for protein sequence and structure analysis
por: Shameer, Khader, et al.
Publicado: (2007)

A web server for transcription factor binding site prediction
por: Su, Gang, et al.
Publicado: (2006)

ESBRI: A web server for evaluating salt bridges in proteins
por: Costantini, Susan, et al.
Publicado: (2008)

RICHEST ‐ a web server for richness estimation in biological data
por: Durden, Chris, et al.
Publicado: (2009)

XSuLT: a web server for structural annotation and representation of sequence-structure alignments
por: Ochoa-Montaño, Bernardo, et al.
Publicado: (2017)

BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation
por: Baldazzi, Davide, et al.
Publicado: (2021)

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server
por: Biswas, Manosh Kumar, et al.
Publicado: (2018)

JUZBOX: A web server for extracting biomedical words from the protein sequence
por: Bobby, Paul, et al.
Publicado: (2009)

CATH FunFHMMer web server: protein functional annotations using functional family assignments
por: Das, Sayoni, et al.
Publicado: (2015)

SNPnexus: a web server for functional annotation of human genome sequence variation (2020 update)
por: Oscanoa, Jorge, et al.
Publicado: (2020)

LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites
por: Taylor, Paul D, et al.
Publicado: (2006)

The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations
por: Tulpan, Dan, et al.
Publicado: (2010)

CFP: a webserver for constructing sequencebased protein conformational flexibility profiles
por: Kuznetsov, Igor B, et al.
Publicado: (2009)

dbCAN3: automated carbohydrate-active enzyme and substrate annotation
por: Zheng, Jinfang, et al.
Publicado: (2023)

FlexPred: a web-server for predicting residue positions involved in conformational switches in proteins
por: Kuznetsov, Igor B, et al.
Publicado: (2008)

PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization
por: Kaleeckal Mathew, Oommen, et al.
Publicado: (2016)

Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins
por: Dong, Mei-Jing, et al.
Publicado: (2022)

ScanMoment: a web server for combinatorial analysis of basic residues in nucleic acid binding sites
por: Massey, Steven E
Publicado: (2009)

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
por: Wang, Yi, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_2n8e9t95kp77q8tkk2gfvivdip