Completion of genome of Aeromonas salmonicida subsp. salmonicida 01-B526 reveals how sequencing technologies can influence sequence quality and result interpretations

Aeromonas salmonicida subsp. salmonicida is a pathogen that primarily infects salmonids. A strain of this bacterium, 01-B526, has been used in several studies as a reference. The genomic sequence of this strain is available, but comes from pyrosequencing and is the second most fragmented assembly fo...

Descripción completa

Detalles Bibliográficos
Autores principales: Vincent, A.T., Charette, S.J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Taxonogenomics: Genome of a Known Organism
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031243/
https://www.ncbi.nlm.nih.gov/pubmed/29983988
http://dx.doi.org/10.1016/j.nmni.2018.05.007
Descripción
Sumario:Aeromonas salmonicida subsp. salmonicida is a pathogen that primarily infects salmonids. A strain of this bacterium, 01-B526, has been used in several studies as a reference. The genomic sequence of this strain is available, but comes from pyrosequencing and is the second most fragmented assembly for this bacterium. We generated its closed genome sequence and found a pitfall in result interpretations associated with low-quality genomic sequences.

Ejemplares similares