Cargando…

Deciphering RNA-Recognition Patterns of Intrinsically Disordered Proteins

Intrinsically disordered regions (IDRs) and protein (IDPs) are highly flexible owing to their lack of well-defined structures. A subset of such proteins interacts with various substrates; including RNA; frequently adopting regular structures in the final complex. In this work; we have analysed a dat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Srivastava, Ambuj, Ahmad, Shandar, Gromiha, M. Michael
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6032373/ https://www.ncbi.nlm.nih.gov/pubmed/29843482 http://dx.doi.org/10.3390/ijms19061595

Ejemplares similares

Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase 5
por: Srivastava, Ambuj, et al.
Publicado: (2021)

TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins
por: Gromiha, M. Michael, et al.
Publicado: (2005)

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins
por: Nagarajan, R., et al.
Publicado: (2013)

ASAView: Database and tool for solvent accessibility representation in proteins
por: Ahmad, Shandar, et al.
Publicado: (2004)

ProNAB: database for binding affinities of protein–nucleic acid complexes and their mutants
por: Harini, Kannan, et al.
Publicado: (2021)

COVID-19 outbreak: history, mechanism, transmission, structural studies and therapeutics
por: Yesudhas, Dhanusha, et al.
Publicado: (2020)

Protein flexibility, not disorder, is intrinsic to molecular recognition
por: Janin, Joël, et al.
Publicado: (2013)

A structural perspective of RNA recognition by intrinsically disordered proteins
por: Basu, Sushmita, et al.
Publicado: (2016)

Exploring antibody repurposing for COVID-19: beyond presumed roles of therapeutic antibodies
por: Rawat, Puneet, et al.
Publicado: (2021)

Molecular Recognition by Templated Folding of an Intrinsically Disordered Protein
por: Toto, Angelo, et al.
Publicado: (2016)

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018
por: Ahmad, Shandar, et al.
Publicado: (2019)

Structure based approach for understanding organism specific recognition of protein-RNA complexes
por: Nagarajan, Raju, et al.
Publicado: (2015)

Deciphering the RRM-RNA recognition code: A computational analysis
por: Roca-Martínez, Joel, et al.
Publicado: (2023)

Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction
por: Ahmad, Shandar, et al.
Publicado: (2011)

Editorial: Protein recognition and associated diseases
por: Gromiha, M. Michael, et al.
Publicado: (2023)

Prediction of folding patterns for intrinsic disordered protein
por: Yang, Jiaan, et al.
Publicado: (2023)

Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins
por: Piai, Alessandro, et al.
Publicado: (2016)

Electrostatically Accelerated Encounter and Folding for Facile Recognition of Intrinsically Disordered Proteins
por: Ganguly, Debabani, et al.
Publicado: (2013)

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein–DNA recognition
por: Ahmad, Shandar, et al.
Publicado: (2006)

Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins
por: Ahmad, Shandar, et al.
Publicado: (2008)

Deciphering evolution of immune recognition in antibodies
por: Kaur, Harmeet, et al.
Publicado: (2018)

Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data
por: Morita, Mizuki, et al.
Publicado: (2011)

Deciphering the Chemical Basis of Nestmate Recognition
por: van Wilgenburg, Ellen, et al.
Publicado: (2010)

Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis
por: Branciamore, Sergio, et al.
Publicado: (2018)

Multi-state recognition pathway of the intrinsically disordered protein kinase inhibitor by protein kinase A
por: Olivieri, Cristina, et al.
Publicado: (2020)

Prediction of dinucleotide-specific RNA-binding sites in proteins
por: Fernandez, Michael, et al.
Publicado: (2011)

RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae
por: Ivanyi-Nagy, Roland, et al.
Publicado: (2008)

Deciphering and engineering chromodomain-methyllysine peptide recognition
por: Hard, Ryan, et al.
Publicado: (2018)

Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data
por: Ahmad, Shandar, et al.
Publicado: (2011)

Hamiltonian Mapping Revisited: Calibrating Minimalist Models to Capture Molecular Recognition by Intrinsically Disordered Proteins
por: Law, Sean M., et al.
Publicado: (2014)

Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3
por: Smith, Jarrett, et al.
Publicado: (2016)

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins
por: Varadi, Mihaly, et al.
Publicado: (2015)

PSSM-based prediction of DNA binding sites in proteins
por: Ahmad, Shandar, et al.
Publicado: (2005)

An intrinsically Disordered RNA Binding Protein Modulates mRNA Translation and Storage
por: Chowdhury, Mashiat N., et al.
Publicado: (2023)

Deep Learning Deciphers Protein–RNA Interaction
por: Li, Ming
Publicado: (2019)

What’s in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered
por: Dunker, A. Keith, et al.
Publicado: (2013)

Effects of Sequence Composition, Patterning and Hydrodynamics on the Conformation and Dynamics of Intrinsically Disordered Proteins
por: Vovk, Andrei, et al.
Publicado: (2023)

Parallel and Sequential Pathways of Molecular Recognition of a Tandem-Repeat Protein and Its Intrinsically Disordered Binding Partner
por: Smith, Ben M., et al.
Publicado: (2021)

Genus-specific pattern of intrinsically disordered central regions in the nucleocapsid protein of coronaviruses
por: Barik, Sailen
Publicado: (2020)

Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
por: Malik, Adeel, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_uhkec7jpumbd2e22brvrsqo79f