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Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress

Drought is an important abiotic factor that threatens the growth and development of plants. Verbena bonariensis is a widely used landscape plant with a very high ornamental value. We found that Verbena has drought tolerance in production practice, so in order to delve into its mechanism of drought r...

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Autores principales: Wang, Bei, Lv, Xue-Qi, He, Ling, Zhao, Qian, Xu, Mao-Sheng, Zhang, Lei, Jia, Yin, Zhang, Fan, Liu, Feng-Luan, Liu, Qing-Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6032440/
https://www.ncbi.nlm.nih.gov/pubmed/29899256
http://dx.doi.org/10.3390/ijms19061751
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author Wang, Bei
Lv, Xue-Qi
He, Ling
Zhao, Qian
Xu, Mao-Sheng
Zhang, Lei
Jia, Yin
Zhang, Fan
Liu, Feng-Luan
Liu, Qing-Lin
author_facet Wang, Bei
Lv, Xue-Qi
He, Ling
Zhao, Qian
Xu, Mao-Sheng
Zhang, Lei
Jia, Yin
Zhang, Fan
Liu, Feng-Luan
Liu, Qing-Lin
author_sort Wang, Bei
collection PubMed
description Drought is an important abiotic factor that threatens the growth and development of plants. Verbena bonariensis is a widely used landscape plant with a very high ornamental value. We found that Verbena has drought tolerance in production practice, so in order to delve into its mechanism of drought resistance and screen out its drought-resistance genes, we used the RNA-Seq platform to perform a de novo transcriptome assembly to analyze Verbena transcription response to drought stress. By high-throughput sequencing with Illumina Hiseq Xten, a total of 44.59 Gb clean data was obtained from T01 (control group) and T02 (drought experiment group). After assembly, 111,313 unigenes were obtained, and 53,757 of them were annotated by compared databases. In this study, 4829 differentially expressed genes were obtained, of which 4165 were annotated. We performed GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway enrichment analyses, and explored a lot of differently expressed genes related to plant energy production, hormone synthesis, cell signal transduction, and metabolism to understand the stress response of Verbena in drought stress. In addition, we also found that a series of TFs related to drought-resistance of Verbena and provide excellent genetic resources for improving the drought tolerance of crops.
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spelling pubmed-60324402018-07-13 Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress Wang, Bei Lv, Xue-Qi He, Ling Zhao, Qian Xu, Mao-Sheng Zhang, Lei Jia, Yin Zhang, Fan Liu, Feng-Luan Liu, Qing-Lin Int J Mol Sci Article Drought is an important abiotic factor that threatens the growth and development of plants. Verbena bonariensis is a widely used landscape plant with a very high ornamental value. We found that Verbena has drought tolerance in production practice, so in order to delve into its mechanism of drought resistance and screen out its drought-resistance genes, we used the RNA-Seq platform to perform a de novo transcriptome assembly to analyze Verbena transcription response to drought stress. By high-throughput sequencing with Illumina Hiseq Xten, a total of 44.59 Gb clean data was obtained from T01 (control group) and T02 (drought experiment group). After assembly, 111,313 unigenes were obtained, and 53,757 of them were annotated by compared databases. In this study, 4829 differentially expressed genes were obtained, of which 4165 were annotated. We performed GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway enrichment analyses, and explored a lot of differently expressed genes related to plant energy production, hormone synthesis, cell signal transduction, and metabolism to understand the stress response of Verbena in drought stress. In addition, we also found that a series of TFs related to drought-resistance of Verbena and provide excellent genetic resources for improving the drought tolerance of crops. MDPI 2018-06-13 /pmc/articles/PMC6032440/ /pubmed/29899256 http://dx.doi.org/10.3390/ijms19061751 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Bei
Lv, Xue-Qi
He, Ling
Zhao, Qian
Xu, Mao-Sheng
Zhang, Lei
Jia, Yin
Zhang, Fan
Liu, Feng-Luan
Liu, Qing-Lin
Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title_full Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title_fullStr Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title_full_unstemmed Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title_short Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
title_sort whole-transcriptome sequence analysis of verbena bonariensis in response to drought stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6032440/
https://www.ncbi.nlm.nih.gov/pubmed/29899256
http://dx.doi.org/10.3390/ijms19061751
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