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An integrative approach to develop computational pipeline for drug-target interaction network analysis

Understanding the general principles governing the functioning of biological networks is a major challenge of the current era. Functionality of biological networks can be observed from drug and target interaction perspective. All possible modes of operations of biological networks are confined by th...

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Autores principales: Bansal, Ankush, Srivastava, Pulkit Anupam, Singh, Tiratha Raj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035197/
https://www.ncbi.nlm.nih.gov/pubmed/29980766
http://dx.doi.org/10.1038/s41598-018-28577-6
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author Bansal, Ankush
Srivastava, Pulkit Anupam
Singh, Tiratha Raj
author_facet Bansal, Ankush
Srivastava, Pulkit Anupam
Singh, Tiratha Raj
author_sort Bansal, Ankush
collection PubMed
description Understanding the general principles governing the functioning of biological networks is a major challenge of the current era. Functionality of biological networks can be observed from drug and target interaction perspective. All possible modes of operations of biological networks are confined by the interaction analysis. Several of the existing approaches in this direction, however, are data-driven and thus lack potential to be generalized and extrapolated to different species. In this paper, we demonstrate a systems pharmacology pipeline and discuss how the network theory, along with gene ontology (GO) analysis, co-expression analysis, module re-construction, pathway mapping and structure level analysis can be used to decipher important properties of biological networks with the aim to propose lead molecule for the therapeutic interventions of various diseases.
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spelling pubmed-60351972018-07-12 An integrative approach to develop computational pipeline for drug-target interaction network analysis Bansal, Ankush Srivastava, Pulkit Anupam Singh, Tiratha Raj Sci Rep Article Understanding the general principles governing the functioning of biological networks is a major challenge of the current era. Functionality of biological networks can be observed from drug and target interaction perspective. All possible modes of operations of biological networks are confined by the interaction analysis. Several of the existing approaches in this direction, however, are data-driven and thus lack potential to be generalized and extrapolated to different species. In this paper, we demonstrate a systems pharmacology pipeline and discuss how the network theory, along with gene ontology (GO) analysis, co-expression analysis, module re-construction, pathway mapping and structure level analysis can be used to decipher important properties of biological networks with the aim to propose lead molecule for the therapeutic interventions of various diseases. Nature Publishing Group UK 2018-07-06 /pmc/articles/PMC6035197/ /pubmed/29980766 http://dx.doi.org/10.1038/s41598-018-28577-6 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bansal, Ankush
Srivastava, Pulkit Anupam
Singh, Tiratha Raj
An integrative approach to develop computational pipeline for drug-target interaction network analysis
title An integrative approach to develop computational pipeline for drug-target interaction network analysis
title_full An integrative approach to develop computational pipeline for drug-target interaction network analysis
title_fullStr An integrative approach to develop computational pipeline for drug-target interaction network analysis
title_full_unstemmed An integrative approach to develop computational pipeline for drug-target interaction network analysis
title_short An integrative approach to develop computational pipeline for drug-target interaction network analysis
title_sort integrative approach to develop computational pipeline for drug-target interaction network analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035197/
https://www.ncbi.nlm.nih.gov/pubmed/29980766
http://dx.doi.org/10.1038/s41598-018-28577-6
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