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Splicing heterogeneity: separating signal from noise
Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036703/ https://www.ncbi.nlm.nih.gov/pubmed/29986741 http://dx.doi.org/10.1186/s13059-018-1467-4 |
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author | Wan, Yihan Larson, Daniel R. |
author_facet | Wan, Yihan Larson, Daniel R. |
author_sort | Wan, Yihan |
collection | PubMed |
description | Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noise with little to no impact. The dynamic nature of the spliceosome provides numerous opportunities for regulation but is also the source of stochastic fluctuations. We discuss possible origins of splicing stochasticity, the experimental approaches for studying heterogeneity in isoforms, and the potential biological significance of noisy splicing in development and disease. |
format | Online Article Text |
id | pubmed-6036703 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-60367032018-07-12 Splicing heterogeneity: separating signal from noise Wan, Yihan Larson, Daniel R. Genome Biol Opinion Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noise with little to no impact. The dynamic nature of the spliceosome provides numerous opportunities for regulation but is also the source of stochastic fluctuations. We discuss possible origins of splicing stochasticity, the experimental approaches for studying heterogeneity in isoforms, and the potential biological significance of noisy splicing in development and disease. BioMed Central 2018-07-09 /pmc/articles/PMC6036703/ /pubmed/29986741 http://dx.doi.org/10.1186/s13059-018-1467-4 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Opinion Wan, Yihan Larson, Daniel R. Splicing heterogeneity: separating signal from noise |
title | Splicing heterogeneity: separating signal from noise |
title_full | Splicing heterogeneity: separating signal from noise |
title_fullStr | Splicing heterogeneity: separating signal from noise |
title_full_unstemmed | Splicing heterogeneity: separating signal from noise |
title_short | Splicing heterogeneity: separating signal from noise |
title_sort | splicing heterogeneity: separating signal from noise |
topic | Opinion |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036703/ https://www.ncbi.nlm.nih.gov/pubmed/29986741 http://dx.doi.org/10.1186/s13059-018-1467-4 |
work_keys_str_mv | AT wanyihan splicingheterogeneityseparatingsignalfromnoise AT larsondanielr splicingheterogeneityseparatingsignalfromnoise |