Cargando…

Splicing heterogeneity: separating signal from noise

Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noi...

Descripción completa

Detalles Bibliográficos
Autores principales: Wan, Yihan, Larson, Daniel R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036703/
https://www.ncbi.nlm.nih.gov/pubmed/29986741
http://dx.doi.org/10.1186/s13059-018-1467-4
_version_ 1783338203288174592
author Wan, Yihan
Larson, Daniel R.
author_facet Wan, Yihan
Larson, Daniel R.
author_sort Wan, Yihan
collection PubMed
description Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noise with little to no impact. The dynamic nature of the spliceosome provides numerous opportunities for regulation but is also the source of stochastic fluctuations. We discuss possible origins of splicing stochasticity, the experimental approaches for studying heterogeneity in isoforms, and the potential biological significance of noisy splicing in development and disease.
format Online
Article
Text
id pubmed-6036703
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-60367032018-07-12 Splicing heterogeneity: separating signal from noise Wan, Yihan Larson, Daniel R. Genome Biol Opinion Single-cell analyses have revealed a tremendous variety among cells in the abundance and chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the spliceosome. Little is known about how many of the resulting isoforms are biologically functional or just provide noise with little to no impact. The dynamic nature of the spliceosome provides numerous opportunities for regulation but is also the source of stochastic fluctuations. We discuss possible origins of splicing stochasticity, the experimental approaches for studying heterogeneity in isoforms, and the potential biological significance of noisy splicing in development and disease. BioMed Central 2018-07-09 /pmc/articles/PMC6036703/ /pubmed/29986741 http://dx.doi.org/10.1186/s13059-018-1467-4 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Opinion
Wan, Yihan
Larson, Daniel R.
Splicing heterogeneity: separating signal from noise
title Splicing heterogeneity: separating signal from noise
title_full Splicing heterogeneity: separating signal from noise
title_fullStr Splicing heterogeneity: separating signal from noise
title_full_unstemmed Splicing heterogeneity: separating signal from noise
title_short Splicing heterogeneity: separating signal from noise
title_sort splicing heterogeneity: separating signal from noise
topic Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036703/
https://www.ncbi.nlm.nih.gov/pubmed/29986741
http://dx.doi.org/10.1186/s13059-018-1467-4
work_keys_str_mv AT wanyihan splicingheterogeneityseparatingsignalfromnoise
AT larsondanielr splicingheterogeneityseparatingsignalfromnoise