Cargando…

PTM-ssMP: A Web Server for Predicting Different Types of Post-translational Modification Sites Using Novel Site-specific Modification Profile

Protein post-translational modifications (PTMs) are chemical modifications of a protein after its translation. Owing to its play an important role in deep understanding of various biological processes and the development of effective drugs, PTM site prediction have become a hot topic in bioinformati...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Yu, Wang, Minghui, Xi, Jianing, Luo, Fenglin, Li, Ao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Ivyspring International Publisher 2018
Materias:	Research Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036757/ https://www.ncbi.nlm.nih.gov/pubmed/29989096 http://dx.doi.org/10.7150/ijbs.24121

Ejemplares similares

Vienna-PTM web server: a toolkit for MD simulations of protein post-translational modifications
por: Margreitter, Christian, et al.
Publicado: (2013)

Networking of predicted post-translational modification (PTM) sites in human EGFR
por: Malik, Arshi, et al.
Publicado: (2019)

dbPTM: an information repository of protein post-translational modification
por: Lee, Tzong-Yi, et al.
Publicado: (2006)

The Burden of Post-Translational Modification (PTM)—Disrupting Mutations in the Tumor Matrisome
por: Holstein, Elisa, et al.
Publicado: (2021)

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins
por: Su, Min-Gang, et al.
Publicado: (2014)

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications
por: Lu, Cheng-Tsung, et al.
Publicado: (2013)

SysPTM 2.0: an updated systematic resource for post-translational modification
por: Li, Jing, et al.
Publicado: (2014)

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications
por: Huang, Kai-Yao, et al.
Publicado: (2019)

Post-translational modifications (PTM): analytical approaches, signaling, physiology and pathophysiology—part I
por: Tsikas, Dimitrios
Publicado: (2021)

Prediction of post-translational modification sites using multiple kernel support vector machine
por: Wang, BingHua, et al.
Publicado: (2017)

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins
por: Huang, Kai-Yao, et al.
Publicado: (2016)

PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results
por: Geiszler, Daniel J., et al.
Publicado: (2020)

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications
por: Li, Zhongyan, et al.
Publicado: (2021)

PTMsnp: A Web Server for the Identification of Driver Mutations That Affect Protein Post-translational Modification
por: Peng, Di, et al.
Publicado: (2020)

FAIMS Enhances the Detection of PTM Crosstalk Sites
por: Adoni, Kish R., et al.
Publicado: (2022)

Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy
por: Cesnik, Anthony J., et al.
Publicado: (2015)

Integrated analysis to study the interplay between post-translational modifications (PTM) in hepatitis C virus proteins and hepatocellular carcinoma (HCC) development
por: Ikram, Aqsa, et al.
Publicado: (2022)

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
por: Craveur, Pierrick, et al.
Publicado: (2014)

A homology-based pipeline for global prediction of post-translational modification sites
por: Chen, Xiang, et al.
Publicado: (2016)

Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes
por: Reimand, Jüri, et al.
Publicado: (2015)

Post-translational Modifications near the Quinone Binding Site of Mammalian Complex I
por: Carroll, Joe, et al.
Publicado: (2013)

Assessing predictors for new post translational modification sites: A case study on hydroxylation
por: Piovesan, Damiano, et al.
Publicado: (2020)

Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling
por: Zecha, Jana, et al.
Publicado: (2022)

Post-Translational Modifications Aid Archaeal Survival
por: Gong, Ping, et al.
Publicado: (2020)

MOD(i) : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra
por: Kim, Sangtae, et al.
Publicado: (2006)

PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes
por: Everett, Logan, et al.
Publicado: (2009)

Prediction and Analysis of Post-Translational Pyruvoyl Residue Modification Sites from Internal Serines in Proteins
por: Jiang, Yang, et al.
Publicado: (2013)

Mini-review: Recent advances in post-translational modification site prediction based on deep learning
por: Meng, Lingkuan, et al.
Publicado: (2022)

SPEER-SERVER: a web server for prediction of protein specificity determining sites
por: Chakraborty, Abhijit, et al.
Publicado: (2012)

SUMOsp: a web server for sumoylation site prediction
por: Xue, Yu, et al.
Publicado: (2006)

Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()
por: Breitwieser, Florian P., et al.
Publicado: (2013)

Profile of urinary amino acids and their post-translational modifications (PTM) including advanced glycation end-products (AGEs) of lysine, arginine and cysteine in lean and obese ZSF1 rats
por: Baskal, Svetlana, et al.
Publicado: (2021)

MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics
por: Kohler, Devon, et al.
Publicado: (2022)

PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets
por: Wozniak, Jacob M., et al.
Publicado: (2019)

Computational identification of multiple lysine PTM sites by analyzing the instance hardness and feature importance
por: Ahmed, Sabit, et al.
Publicado: (2021)

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins
por: Krassowski, Michal, et al.
Publicado: (2018)

Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions
por: Su, Min-Gang, et al.
Publicado: (2017)

SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications
por: Chang, Chi-Chang, et al.
Publicado: (2018)

Post translational modification of Parkin
por: Chakraborty, Joy, et al.
Publicado: (2017)

TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets
por: Vicentini, Renato, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_io6rjsnnetu1olna90b8ui0ro7