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A biological perspective towards a standard for information exchange and reporting in XAS
The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and inte...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6038602/ https://www.ncbi.nlm.nih.gov/pubmed/29979154 http://dx.doi.org/10.1107/S1600577518008779 |
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author | Sarangi, Ritimukta |
author_facet | Sarangi, Ritimukta |
author_sort | Sarangi, Ritimukta |
collection | PubMed |
description | The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and interpretation. The bio-XAS community is therefore well suited for the development of a data-reporting standard with the specific aim of creating a feedback loop for improving/standardizing data analysis protocols and optionally to make published data available to collaborators/researchers in a meaningful and quantitative format. The XIF (XAFS information file) reporting format presented here contains key experimental and analysis parameters, useful in developing a consistent platform for bio-XAS research worldwide. Such a reporting standard, enforced by the user community and publishing groups alike, can be an important step towards the standardization of data measurement and analysis techniques in bio-XAS. |
format | Online Article Text |
id | pubmed-6038602 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-60386022018-07-12 A biological perspective towards a standard for information exchange and reporting in XAS Sarangi, Ritimukta J Synchrotron Radiat Q2xafs2017 Workshop The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and interpretation. The bio-XAS community is therefore well suited for the development of a data-reporting standard with the specific aim of creating a feedback loop for improving/standardizing data analysis protocols and optionally to make published data available to collaborators/researchers in a meaningful and quantitative format. The XIF (XAFS information file) reporting format presented here contains key experimental and analysis parameters, useful in developing a consistent platform for bio-XAS research worldwide. Such a reporting standard, enforced by the user community and publishing groups alike, can be an important step towards the standardization of data measurement and analysis techniques in bio-XAS. International Union of Crystallography 2018-06-27 /pmc/articles/PMC6038602/ /pubmed/29979154 http://dx.doi.org/10.1107/S1600577518008779 Text en © Ritimukta Sarangi 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Q2xafs2017 Workshop Sarangi, Ritimukta A biological perspective towards a standard for information exchange and reporting in XAS |
title | A biological perspective towards a standard for information exchange and reporting in XAS |
title_full | A biological perspective towards a standard for information exchange and reporting in XAS |
title_fullStr | A biological perspective towards a standard for information exchange and reporting in XAS |
title_full_unstemmed | A biological perspective towards a standard for information exchange and reporting in XAS |
title_short | A biological perspective towards a standard for information exchange and reporting in XAS |
title_sort | biological perspective towards a standard for information exchange and reporting in xas |
topic | Q2xafs2017 Workshop |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6038602/ https://www.ncbi.nlm.nih.gov/pubmed/29979154 http://dx.doi.org/10.1107/S1600577518008779 |
work_keys_str_mv | AT sarangiritimukta abiologicalperspectivetowardsastandardforinformationexchangeandreportinginxas AT sarangiritimukta biologicalperspectivetowardsastandardforinformationexchangeandreportinginxas |