Cargando…
Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-li...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039506/ https://www.ncbi.nlm.nih.gov/pubmed/29991682 http://dx.doi.org/10.1038/s41598-018-28647-9 |
_version_ | 1783338686740430848 |
---|---|
author | Del Giudice, Marco Bosia, Carla Grigolon, Silvia Bo, Stefano |
author_facet | Del Giudice, Marco Bosia, Carla Grigolon, Silvia Bo, Stefano |
author_sort | Del Giudice, Marco |
collection | PubMed |
description | Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-like profiles of the amounts of free molecules as a function of the parameters determining their possible maximum abundance. However, biochemical processes are probabilistic and take place in stochastically fluctuating environments. How these different sources of noise affect the final outcome of the network is not completely characterised yet. In this paper we specifically investigate the effects induced by a source of extrinsic noise onto a minimal stochastic model of molecular sequestration. We analytically show how bimodal distributions of the targets can appear and characterise them as a result of noise filtering mediated by the threshold response. We then address the correlations between target species induced by the sequestrant and discuss how extrinsic noise can turn the negative correlation caused by competition into a positive one. Finally, we consider the more complex scenario of competitive inhibition for enzymatic kinetics and discuss the relevance of our findings with respect to applications. |
format | Online Article Text |
id | pubmed-6039506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-60395062018-07-12 Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation Del Giudice, Marco Bosia, Carla Grigolon, Silvia Bo, Stefano Sci Rep Article Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-like profiles of the amounts of free molecules as a function of the parameters determining their possible maximum abundance. However, biochemical processes are probabilistic and take place in stochastically fluctuating environments. How these different sources of noise affect the final outcome of the network is not completely characterised yet. In this paper we specifically investigate the effects induced by a source of extrinsic noise onto a minimal stochastic model of molecular sequestration. We analytically show how bimodal distributions of the targets can appear and characterise them as a result of noise filtering mediated by the threshold response. We then address the correlations between target species induced by the sequestrant and discuss how extrinsic noise can turn the negative correlation caused by competition into a positive one. Finally, we consider the more complex scenario of competitive inhibition for enzymatic kinetics and discuss the relevance of our findings with respect to applications. Nature Publishing Group UK 2018-07-10 /pmc/articles/PMC6039506/ /pubmed/29991682 http://dx.doi.org/10.1038/s41598-018-28647-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Del Giudice, Marco Bosia, Carla Grigolon, Silvia Bo, Stefano Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title | Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title_full | Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title_fullStr | Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title_full_unstemmed | Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title_short | Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
title_sort | stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039506/ https://www.ncbi.nlm.nih.gov/pubmed/29991682 http://dx.doi.org/10.1038/s41598-018-28647-9 |
work_keys_str_mv | AT delgiudicemarco stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation AT bosiacarla stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation AT grigolonsilvia stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation AT bostefano stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation |