Cargando…

Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation

Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-li...

Descripción completa

Detalles Bibliográficos
Autores principales: Del Giudice, Marco, Bosia, Carla, Grigolon, Silvia, Bo, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039506/
https://www.ncbi.nlm.nih.gov/pubmed/29991682
http://dx.doi.org/10.1038/s41598-018-28647-9
_version_ 1783338686740430848
author Del Giudice, Marco
Bosia, Carla
Grigolon, Silvia
Bo, Stefano
author_facet Del Giudice, Marco
Bosia, Carla
Grigolon, Silvia
Bo, Stefano
author_sort Del Giudice, Marco
collection PubMed
description Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-like profiles of the amounts of free molecules as a function of the parameters determining their possible maximum abundance. However, biochemical processes are probabilistic and take place in stochastically fluctuating environments. How these different sources of noise affect the final outcome of the network is not completely characterised yet. In this paper we specifically investigate the effects induced by a source of extrinsic noise onto a minimal stochastic model of molecular sequestration. We analytically show how bimodal distributions of the targets can appear and characterise them as a result of noise filtering mediated by the threshold response. We then address the correlations between target species induced by the sequestrant and discuss how extrinsic noise can turn the negative correlation caused by competition into a positive one. Finally, we consider the more complex scenario of competitive inhibition for enzymatic kinetics and discuss the relevance of our findings with respect to applications.
format Online
Article
Text
id pubmed-6039506
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-60395062018-07-12 Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation Del Giudice, Marco Bosia, Carla Grigolon, Silvia Bo, Stefano Sci Rep Article Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-like profiles of the amounts of free molecules as a function of the parameters determining their possible maximum abundance. However, biochemical processes are probabilistic and take place in stochastically fluctuating environments. How these different sources of noise affect the final outcome of the network is not completely characterised yet. In this paper we specifically investigate the effects induced by a source of extrinsic noise onto a minimal stochastic model of molecular sequestration. We analytically show how bimodal distributions of the targets can appear and characterise them as a result of noise filtering mediated by the threshold response. We then address the correlations between target species induced by the sequestrant and discuss how extrinsic noise can turn the negative correlation caused by competition into a positive one. Finally, we consider the more complex scenario of competitive inhibition for enzymatic kinetics and discuss the relevance of our findings with respect to applications. Nature Publishing Group UK 2018-07-10 /pmc/articles/PMC6039506/ /pubmed/29991682 http://dx.doi.org/10.1038/s41598-018-28647-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Del Giudice, Marco
Bosia, Carla
Grigolon, Silvia
Bo, Stefano
Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title_full Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title_fullStr Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title_full_unstemmed Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title_short Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
title_sort stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039506/
https://www.ncbi.nlm.nih.gov/pubmed/29991682
http://dx.doi.org/10.1038/s41598-018-28647-9
work_keys_str_mv AT delgiudicemarco stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation
AT bosiacarla stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation
AT grigolonsilvia stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation
AT bostefano stochasticsequestrationdynamicsaminimalmodelwithextrinsicnoiseforbimodaldistributionsandcompetitorscorrelation