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Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia
Schizophrenia (SCZ) is a devastating genetic mental disorder. Identification of the SCZ risk genes in brains is helpful to understand this disease. Thus, we first used the minimum Redundancy-Maximum Relevance (mRMR) approach to integrate the genome-wide sequence analysis results on SCZ and the expre...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society of Gene & Cell Therapy
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041437/ https://www.ncbi.nlm.nih.gov/pubmed/30195780 http://dx.doi.org/10.1016/j.omtn.2018.05.026 |
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author | Cai, Lei Huang, Tao Su, Jingjing Zhang, Xinxin Chen, Wenzhong Zhang, Fuquan He, Lin Chou, Kuo-Chen |
author_facet | Cai, Lei Huang, Tao Su, Jingjing Zhang, Xinxin Chen, Wenzhong Zhang, Fuquan He, Lin Chou, Kuo-Chen |
author_sort | Cai, Lei |
collection | PubMed |
description | Schizophrenia (SCZ) is a devastating genetic mental disorder. Identification of the SCZ risk genes in brains is helpful to understand this disease. Thus, we first used the minimum Redundancy-Maximum Relevance (mRMR) approach to integrate the genome-wide sequence analysis results on SCZ and the expression quantitative trait locus (eQTL) data from ten brain tissues to identify the genes related to SCZ. Second, we adopted the variance inflation factor regression algorithm to identify their interacting genes in brains. Third, using multiple analysis methods, we explored and validated their roles. By means of the aforementioned procedures, we have found that (1) the cerebellum may play a crucial role in the pathogenesis of SCZ and (2) ITIH4 may be utilized as a clinical biomarker for the diagnosis of SCZ. These interesting findings may stimulate novel strategy for developing new drugs against SCZ. It has not escaped our notice that the approach reported here is of use for studying many other genome diseases as well. |
format | Online Article Text |
id | pubmed-6041437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American Society of Gene & Cell Therapy |
record_format | MEDLINE/PubMed |
spelling | pubmed-60414372018-07-12 Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia Cai, Lei Huang, Tao Su, Jingjing Zhang, Xinxin Chen, Wenzhong Zhang, Fuquan He, Lin Chou, Kuo-Chen Mol Ther Nucleic Acids Article Schizophrenia (SCZ) is a devastating genetic mental disorder. Identification of the SCZ risk genes in brains is helpful to understand this disease. Thus, we first used the minimum Redundancy-Maximum Relevance (mRMR) approach to integrate the genome-wide sequence analysis results on SCZ and the expression quantitative trait locus (eQTL) data from ten brain tissues to identify the genes related to SCZ. Second, we adopted the variance inflation factor regression algorithm to identify their interacting genes in brains. Third, using multiple analysis methods, we explored and validated their roles. By means of the aforementioned procedures, we have found that (1) the cerebellum may play a crucial role in the pathogenesis of SCZ and (2) ITIH4 may be utilized as a clinical biomarker for the diagnosis of SCZ. These interesting findings may stimulate novel strategy for developing new drugs against SCZ. It has not escaped our notice that the approach reported here is of use for studying many other genome diseases as well. American Society of Gene & Cell Therapy 2018-07-11 /pmc/articles/PMC6041437/ /pubmed/30195780 http://dx.doi.org/10.1016/j.omtn.2018.05.026 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Cai, Lei Huang, Tao Su, Jingjing Zhang, Xinxin Chen, Wenzhong Zhang, Fuquan He, Lin Chou, Kuo-Chen Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title | Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title_full | Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title_fullStr | Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title_full_unstemmed | Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title_short | Implications of Newly Identified Brain eQTL Genes and Their Interactors in Schizophrenia |
title_sort | implications of newly identified brain eqtl genes and their interactors in schizophrenia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041437/ https://www.ncbi.nlm.nih.gov/pubmed/30195780 http://dx.doi.org/10.1016/j.omtn.2018.05.026 |
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