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Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes

Long non-coding RNAs (lncRNAs) have been widely discovered in several organisms with the help of high-throughput RNA sequencing. LncRNAs are over 200 nt-long transcripts that do not have protein-coding (PC) potential, having been reported in model organisms to act mainly on the overall control of PC...

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Autores principales: Vasconcelos, Elton J R, Mesel, Vinícius C, daSilva, Lucas F, Pires, David S, Lavezzo, Guilherme M, Pereira, Adriana S A, Amaral, Murilo S, Verjovski-Almeida, Sergio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041749/
https://www.ncbi.nlm.nih.gov/pubmed/29992321
http://dx.doi.org/10.1093/database/bay068
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author Vasconcelos, Elton J R
Mesel, Vinícius C
daSilva, Lucas F
Pires, David S
Lavezzo, Guilherme M
Pereira, Adriana S A
Amaral, Murilo S
Verjovski-Almeida, Sergio
author_facet Vasconcelos, Elton J R
Mesel, Vinícius C
daSilva, Lucas F
Pires, David S
Lavezzo, Guilherme M
Pereira, Adriana S A
Amaral, Murilo S
Verjovski-Almeida, Sergio
author_sort Vasconcelos, Elton J R
collection PubMed
description Long non-coding RNAs (lncRNAs) have been widely discovered in several organisms with the help of high-throughput RNA sequencing. LncRNAs are over 200 nt-long transcripts that do not have protein-coding (PC) potential, having been reported in model organisms to act mainly on the overall control of PC gene expression. Little is known about the functionality of lncRNAs in evolutionarily ancient non-model metazoan organisms, like Schistosoma mansoni, the parasite that causes schistosomiasis, one of the most prevalent infectious-parasitic diseases worldwide. In a recent transcriptomics effort, we identified thousands of S. mansoni lncRNAs predicted to be functional along the course of parasite development. Here, we present an online catalog of each of the S. mansoni lncRNAs whose expression is correlated to PC genes along the parasite life-cycle, which can be conveniently browsed and downloaded through a new web resource http://verjolab.usp.br. We also provide access now to navigation on the co-expression networks disclosed in our previous publication, where we correlated mRNAs and lncRNAs transcriptional patterns across five life-cycle stages/forms, pinpointing biological processes where lncRNAs might act upon. Database URL: http://verjolab.usp.br
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spelling pubmed-60417492018-07-17 Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes Vasconcelos, Elton J R Mesel, Vinícius C daSilva, Lucas F Pires, David S Lavezzo, Guilherme M Pereira, Adriana S A Amaral, Murilo S Verjovski-Almeida, Sergio Database (Oxford) Original Article Long non-coding RNAs (lncRNAs) have been widely discovered in several organisms with the help of high-throughput RNA sequencing. LncRNAs are over 200 nt-long transcripts that do not have protein-coding (PC) potential, having been reported in model organisms to act mainly on the overall control of PC gene expression. Little is known about the functionality of lncRNAs in evolutionarily ancient non-model metazoan organisms, like Schistosoma mansoni, the parasite that causes schistosomiasis, one of the most prevalent infectious-parasitic diseases worldwide. In a recent transcriptomics effort, we identified thousands of S. mansoni lncRNAs predicted to be functional along the course of parasite development. Here, we present an online catalog of each of the S. mansoni lncRNAs whose expression is correlated to PC genes along the parasite life-cycle, which can be conveniently browsed and downloaded through a new web resource http://verjolab.usp.br. We also provide access now to navigation on the co-expression networks disclosed in our previous publication, where we correlated mRNAs and lncRNAs transcriptional patterns across five life-cycle stages/forms, pinpointing biological processes where lncRNAs might act upon. Database URL: http://verjolab.usp.br Oxford University Press 2018-07-09 /pmc/articles/PMC6041749/ /pubmed/29992321 http://dx.doi.org/10.1093/database/bay068 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Vasconcelos, Elton J R
Mesel, Vinícius C
daSilva, Lucas F
Pires, David S
Lavezzo, Guilherme M
Pereira, Adriana S A
Amaral, Murilo S
Verjovski-Almeida, Sergio
Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title_full Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title_fullStr Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title_full_unstemmed Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title_short Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes
title_sort atlas of schistosoma mansoni long non-coding rnas and their expression correlation to protein-coding genes
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041749/
https://www.ncbi.nlm.nih.gov/pubmed/29992321
http://dx.doi.org/10.1093/database/bay068
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