Cargando…
AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes
MOTIVATION: Reliance on mapping to a single reference haplotype currently limits accurate estimation of allele or haplotype-specific expression using RNA-sequencing, notably in highly polymorphic regions such as the major histocompatibility complex. RESULTS: We present AltHapAlignR, a method incorpo...
Autores principales: | Lee, Wanseon, Plant, Katharine, Humburg, Peter, Knight, Julian C |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041798/ https://www.ncbi.nlm.nih.gov/pubmed/29514179 http://dx.doi.org/10.1093/bioinformatics/bty125 |
Ejemplares similares
-
Genomic mapping of the MHC transactivator CIITA using an integrated ChIP-seq and genetical genomics approach
por: Wong, Daniel, et al.
Publicado: (2014) -
High resolution HLA haplotyping by imputation for a British population bioresource
por: Neville, Matt J., et al.
Publicado: (2017) -
Characterisation of the global transcriptional response to heat shock and the impact of individual genetic variation
por: Humburg, Peter, et al.
Publicado: (2016) -
geneHapR: an R package for gene haplotypic statistics and visualization
por: Zhang, Renliang, et al.
Publicado: (2023) -
hapConstructor: automatic construction and testing of haplotypes in a Monte Carlo framework
por: Abo, Ryan, et al.
Publicado: (2008)