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Commentary to: a cross-validation-based approach for delimiting reliable home range estimates
BACKGROUND: Continued exploration of the performance of the recently proposed cross-validation-based approach for delimiting home ranges using the Time Local Convex Hull (T-LoCoH) method has revealed a number of issues with the original formulation. MAIN TEXT: Here we replace the ad hoc cross-valida...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6042211/ https://www.ncbi.nlm.nih.gov/pubmed/30009032 http://dx.doi.org/10.1186/s40462-018-0128-2 |
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author | Dougherty, Eric R. de Valpine, Perry Carlson, Colin J. Blackburn, Jason K. Getz, Wayne M. |
author_facet | Dougherty, Eric R. de Valpine, Perry Carlson, Colin J. Blackburn, Jason K. Getz, Wayne M. |
author_sort | Dougherty, Eric R. |
collection | PubMed |
description | BACKGROUND: Continued exploration of the performance of the recently proposed cross-validation-based approach for delimiting home ranges using the Time Local Convex Hull (T-LoCoH) method has revealed a number of issues with the original formulation. MAIN TEXT: Here we replace the ad hoc cross-validation score with a new formulation based on the total log probability of out-of-sample predictions. To obtain these probabilities, we interpret the normalized LoCoH hulls as a probability density. The application of the approach described here results in optimal parameter sets that differ dramatically from those selected using the original formulation. The derived metrics of home range size, mean revisitation rate, and mean duration of visit are also altered using the corrected formulation. CONCLUSION: Despite these differences, we encourage the use of the cross-validation-based approach, as it provides a unifying framework governed by the statistical properties of the home ranges rather than subjective selections by the user. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-018-0128-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6042211 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-60422112018-07-13 Commentary to: a cross-validation-based approach for delimiting reliable home range estimates Dougherty, Eric R. de Valpine, Perry Carlson, Colin J. Blackburn, Jason K. Getz, Wayne M. Mov Ecol Commentary BACKGROUND: Continued exploration of the performance of the recently proposed cross-validation-based approach for delimiting home ranges using the Time Local Convex Hull (T-LoCoH) method has revealed a number of issues with the original formulation. MAIN TEXT: Here we replace the ad hoc cross-validation score with a new formulation based on the total log probability of out-of-sample predictions. To obtain these probabilities, we interpret the normalized LoCoH hulls as a probability density. The application of the approach described here results in optimal parameter sets that differ dramatically from those selected using the original formulation. The derived metrics of home range size, mean revisitation rate, and mean duration of visit are also altered using the corrected formulation. CONCLUSION: Despite these differences, we encourage the use of the cross-validation-based approach, as it provides a unifying framework governed by the statistical properties of the home ranges rather than subjective selections by the user. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-018-0128-2) contains supplementary material, which is available to authorized users. BioMed Central 2018-07-12 /pmc/articles/PMC6042211/ /pubmed/30009032 http://dx.doi.org/10.1186/s40462-018-0128-2 Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Commentary Dougherty, Eric R. de Valpine, Perry Carlson, Colin J. Blackburn, Jason K. Getz, Wayne M. Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title | Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title_full | Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title_fullStr | Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title_full_unstemmed | Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title_short | Commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
title_sort | commentary to: a cross-validation-based approach for delimiting reliable home range estimates |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6042211/ https://www.ncbi.nlm.nih.gov/pubmed/30009032 http://dx.doi.org/10.1186/s40462-018-0128-2 |
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