Cargando…

LMDIPred: A web-server for prediction of linear peptide sequences binding to SH3, WW and PDZ domains

Protein-peptide interactions form an important subset of the total protein interaction network in the cell and play key roles in signaling and regulatory networks, and in major biological processes like cellular localization, protein degradation, and immune response. In this work, we have described...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sarkar, Debasree, Jana, Tanmoy, Saha, Sudipto
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6042728/ https://www.ncbi.nlm.nih.gov/pubmed/30001346 http://dx.doi.org/10.1371/journal.pone.0200430

Ejemplares similares

LMPID: A manually curated database of linear motifs mediating protein–protein interactions
por: Sarkar, Debasree, et al.
Publicado: (2015)

PPIMpred: a web server for high-throughput screening of small molecules targeting protein–protein interaction
por: Jana, Tanmoy, et al.
Publicado: (2017)

Computational Framework for Prediction of Peptide Sequences That May Mediate Multiple Protein Interactions in Cancer-Associated Hub Proteins
por: Sarkar, Debasree, et al.
Publicado: (2016)

A physical model for PDZ-domain/peptide interactions
por: Kaufmann, Kristian, et al.
Publicado: (2010)

Central role of Yes-associated protein and WW-domain-containing transcriptional co-activator with PDZ-binding motif in pancreatic cancer development
por: Rozengurt, Enrique, et al.
Publicado: (2019)

Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove
por: Ivanova, Marina E., et al.
Publicado: (2015)

Peptide Binding Properties of the Three PDZ Domains of Bazooka (Drosophila Par-3)
por: Yu, Cao Guo, et al.
Publicado: (2014)

Tungsten Oxide Nanodots Exhibit Mild Interactions with WW and SH3 Modular Protein Domains
por: Song, Wei, et al.
Publicado: (2020)

PDZ domains and their binding partners: structure, specificity, and modification
por: Lee, Ho-Jin, et al.
Publicado: (2010)

Membrane Binding and Modulation of the PDZ Domain of PICK1
por: Erlendsson, Simon, et al.
Publicado: (2015)

Genome-Wide Analysis of PDZ Domain Binding Reveals Inherent Functional Overlap within the PDZ Interaction Network
por: te Velthuis, Aartjan J. W., et al.
Publicado: (2011)

Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity
por: Roberts, Kyle E., et al.
Publicado: (2012)

Chemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain
por: Amacher, Jeanine F., et al.
Publicado: (2014)

Interaction prediction and classification of PDZ domains
por: Kalyoncu, Sibel, et al.
Publicado: (2010)

Seeking allosteric networks in PDZ domains
por: Gautier, Candice, et al.
Publicado: (2018)

The Conformational Plasticity Vista of PDZ Domains
por: Murciano-Calles, Javier
Publicado: (2020)

MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions
por: Kundu, Kousik, et al.
Publicado: (2014)

PDZ Domains and Viral Infection: Versatile Potentials of HPV-PDZ Interactions in relation to Malignancy
por: Nagasaka, Kazunori, et al.
Publicado: (2013)

The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains
por: Münz, Márton, et al.
Publicado: (2012)

Modular organization of the PDZ domains in the human discs-large protein suggests a mechanism for coupling PDZ domain-binding proteins to ATP and the membrane cytoskeleton
Publicado: (1996)

A Specificity Map for the PDZ Domain Family
por: Tonikian, Raffi, et al.
Publicado: (2008)

The PDZ Domain as a Complex Adaptive System
por: Kurakin, Alexei, et al.
Publicado: (2007)

Application of Wavelet Transform for PDZ Domain Classification
por: Daqrouq, Khaled, et al.
Publicado: (2015)

Plasticity of PDZ domains in ligand recognition and signaling
por: Ivarsson, Ylva
Publicado: (2012)

Resonance assignment of the Shank1 PDZ domain
por: Sánta, Anna, et al.
Publicado: (2022)

Cluster based prediction of PDZ-peptide interactions
por: Kundu, Kousik, et al.
Publicado: (2014)

Characterization of Diverse Internal Binding Specificities of PDZ Domains by Yeast Two-Hybrid Screening of a Special Peptide Library
por: Mu, Yi, et al.
Publicado: (2014)

Nginx 1 Web Server Implementation Cookbook
por: Sarkar, Dipankar
Publicado: (2011)

Phosphorylation-induced changes in the PDZ domain of Dishevelled 3
por: Jurásek, Miroslav, et al.
Publicado: (2021)

Human Serine Racemase Weakly Binds the Third PDZ Domain of PSD-95
por: Giaccari, Roberta, et al.
Publicado: (2022)

Three Binding Conformations of BIO124 in the Pocket of the PICK1 PDZ Domain
por: Stevens, Amy O., et al.
Publicado: (2022)

Domain Analysis and Motif Matcher (DAMM): A Program to Predict Selectivity Determinants in Monosiga brevicollis PDZ Domains Using Human PDZ Data
por: Wofford, Haley A., et al.
Publicado: (2021)

The Dual PDZ Domain from Postsynaptic Density Protein 95 Forms a Scaffold with Peptide Ligand
por: Rodzli, Nazahiyah A., et al.
Publicado: (2020)

A Simple PB/LIE Free Energy Function Accurately Predicts the Peptide Binding Specificity of the Tiam1 PDZ Domain
por: Panel, Nicolas, et al.
Publicado: (2017)

Ensemble-Based Analysis of the Dynamic Allostery in the PSD-95 PDZ3 Domain in Relation to the General Variability of PDZ Structures
por: Dudola, Dániel, et al.
Publicado: (2020)

Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study
por: Barman, Ranjan Kumar, et al.
Publicado: (2015)

Inferring PDZ Domain Multi-Mutant Binding Preferences from Single-Mutant Data
por: Zaslavsky, Elena, et al.
Publicado: (2010)

The binding affinity of PTPN13’s tandem PDZ2/3 domain is allosterically modulated
por: Dicks, Markus, et al.
Publicado: (2019)

SH3 Domain-Peptide Binding Energy Calculations Based on Structural Ensemble and Multiple Peptide Templates
por: Hong, Seungpyo, et al.
Publicado: (2010)

Predicting PDZ domain mediated protein interactions from structure
por: Hui, Shirley, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_to18fb93aop1c5p1r1a5nl2vgh