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Voxel size and gray level normalization of CT radiomic features in lung cancer

Radiomic features are potential imaging biomarkers for therapy response assessment in oncology. However, the robustness of features with respect to imaging parameters is not well established. Previously identified potential imaging biomarkers were found to be intrinsically dependent on voxel size an...

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Autores principales: Shafiq-ul-Hassan, Muhammad, Latifi, Kujtim, Zhang, Geoffrey, Ullah, Ghanim, Gillies, Robert, Moros, Eduardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6043486/
https://www.ncbi.nlm.nih.gov/pubmed/30002441
http://dx.doi.org/10.1038/s41598-018-28895-9
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author Shafiq-ul-Hassan, Muhammad
Latifi, Kujtim
Zhang, Geoffrey
Ullah, Ghanim
Gillies, Robert
Moros, Eduardo
author_facet Shafiq-ul-Hassan, Muhammad
Latifi, Kujtim
Zhang, Geoffrey
Ullah, Ghanim
Gillies, Robert
Moros, Eduardo
author_sort Shafiq-ul-Hassan, Muhammad
collection PubMed
description Radiomic features are potential imaging biomarkers for therapy response assessment in oncology. However, the robustness of features with respect to imaging parameters is not well established. Previously identified potential imaging biomarkers were found to be intrinsically dependent on voxel size and number of gray levels (GLs) in a recent texture phantom investigation. Here, we validate the voxel size and GL in-phantom normalizations in lung tumors. Eighteen patients with non-small cell lung cancer of varying tumor volumes were analyzed. To compare with patient data, phantom scans were acquired on eight different scanners. Twenty four previously identified features were extracted from lung tumors. The Spearman rank (r(s)) and interclass correlation coefficient (ICC) were used as metrics. Eight out of 10 features showed high (r(s) > 0.9) and low (r(s) < 0.5) correlations with number of voxels before and after normalizations, respectively. Likewise, texture features were unstable (ICC < 0.6) and highly stable (ICC > 0.8) before and after GL normalizations, respectively. We conclude that voxel size and GL normalizations derived from a texture phantom study also apply to lung tumors. This study highlights the importance and utility of investigating the robustness of radiomic features with respect to CT imaging parameters in radiomic phantoms.
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spelling pubmed-60434862018-07-15 Voxel size and gray level normalization of CT radiomic features in lung cancer Shafiq-ul-Hassan, Muhammad Latifi, Kujtim Zhang, Geoffrey Ullah, Ghanim Gillies, Robert Moros, Eduardo Sci Rep Article Radiomic features are potential imaging biomarkers for therapy response assessment in oncology. However, the robustness of features with respect to imaging parameters is not well established. Previously identified potential imaging biomarkers were found to be intrinsically dependent on voxel size and number of gray levels (GLs) in a recent texture phantom investigation. Here, we validate the voxel size and GL in-phantom normalizations in lung tumors. Eighteen patients with non-small cell lung cancer of varying tumor volumes were analyzed. To compare with patient data, phantom scans were acquired on eight different scanners. Twenty four previously identified features were extracted from lung tumors. The Spearman rank (r(s)) and interclass correlation coefficient (ICC) were used as metrics. Eight out of 10 features showed high (r(s) > 0.9) and low (r(s) < 0.5) correlations with number of voxels before and after normalizations, respectively. Likewise, texture features were unstable (ICC < 0.6) and highly stable (ICC > 0.8) before and after GL normalizations, respectively. We conclude that voxel size and GL normalizations derived from a texture phantom study also apply to lung tumors. This study highlights the importance and utility of investigating the robustness of radiomic features with respect to CT imaging parameters in radiomic phantoms. Nature Publishing Group UK 2018-07-12 /pmc/articles/PMC6043486/ /pubmed/30002441 http://dx.doi.org/10.1038/s41598-018-28895-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shafiq-ul-Hassan, Muhammad
Latifi, Kujtim
Zhang, Geoffrey
Ullah, Ghanim
Gillies, Robert
Moros, Eduardo
Voxel size and gray level normalization of CT radiomic features in lung cancer
title Voxel size and gray level normalization of CT radiomic features in lung cancer
title_full Voxel size and gray level normalization of CT radiomic features in lung cancer
title_fullStr Voxel size and gray level normalization of CT radiomic features in lung cancer
title_full_unstemmed Voxel size and gray level normalization of CT radiomic features in lung cancer
title_short Voxel size and gray level normalization of CT radiomic features in lung cancer
title_sort voxel size and gray level normalization of ct radiomic features in lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6043486/
https://www.ncbi.nlm.nih.gov/pubmed/30002441
http://dx.doi.org/10.1038/s41598-018-28895-9
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