Cargando…

A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging

Prostate cancer is the most frequently diagnosed cancer in men in the United States. The current main methods for diagnosing prostate cancer include prostate-specific antigen test and transrectal biopsy. Prostate-specific antigen screening has been criticized for overdiagnosis and unnecessary treatm...

Descripción completa

Detalles Bibliográficos
Autores principales: Kirlik, Gokhan, Gullapalli, Rao, D’Souza, Warren, Md Daud Iqbal, Gazi, Naslund, Michael, Wong, Jade, Papadimitrou, John, Roys, Steve, Mistry, Nilesh, Zhang, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6043929/
https://www.ncbi.nlm.nih.gov/pubmed/30013306
http://dx.doi.org/10.1177/1176935118786260
_version_ 1783339379034423296
author Kirlik, Gokhan
Gullapalli, Rao
D’Souza, Warren
Md Daud Iqbal, Gazi
Naslund, Michael
Wong, Jade
Papadimitrou, John
Roys, Steve
Mistry, Nilesh
Zhang, Hao
author_facet Kirlik, Gokhan
Gullapalli, Rao
D’Souza, Warren
Md Daud Iqbal, Gazi
Naslund, Michael
Wong, Jade
Papadimitrou, John
Roys, Steve
Mistry, Nilesh
Zhang, Hao
author_sort Kirlik, Gokhan
collection PubMed
description Prostate cancer is the most frequently diagnosed cancer in men in the United States. The current main methods for diagnosing prostate cancer include prostate-specific antigen test and transrectal biopsy. Prostate-specific antigen screening has been criticized for overdiagnosis and unnecessary treatment, and transrectal biopsy is an invasive procedure with low sensitivity for diagnosis. We provided a quantitative tool using supervised learning with multiparametric imaging to be able to accurately detect cancer foci and its aggressiveness. A total of 223 specimens from patients who received magnetic resonance imaging (MRI) and magnetic resonance spectroscopy imaging prior to the surgery were studied. Multiparametric imaging included extracting T2-map, apparent diffusion coefficient (ADC) using diffusion-weighted MRI, [Formula: see text] using dynamic contrast-enhanced MRI, and 3-dimensional-MR spectroscopy. A pathologist reviewed all 223 specimens and marked cancerous regions on each and graded them with Gleason scores, which served as the ground truth to validate our prediction model. In cancer aggressiveness prediction, the average area under the receiver operating characteristic curve (AUC) value was 0.73 with 95% confidence interval (0.72-0.74) and the average sensitivity and specificity were 0.72 (0.71-0.73) and 0.73 (0.71-0.75), respectively. For the cancer detection model, the average AUC value was 0.68 (0.66-0.70) and the average sensitivity and specificity were 0.73 (0.70-0.77) and 0.62 (0.60-0.68), respectively. Our method included capability to handle class imbalance using adaptive boosting with random undersampling. In addition, our method was noninvasive and allowed for nonsubjective disease characterization, which provided physician information to make personalized treatment decision.
format Online
Article
Text
id pubmed-6043929
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher SAGE Publications
record_format MEDLINE/PubMed
spelling pubmed-60439292018-07-16 A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging Kirlik, Gokhan Gullapalli, Rao D’Souza, Warren Md Daud Iqbal, Gazi Naslund, Michael Wong, Jade Papadimitrou, John Roys, Steve Mistry, Nilesh Zhang, Hao Cancer Inform Original Research Prostate cancer is the most frequently diagnosed cancer in men in the United States. The current main methods for diagnosing prostate cancer include prostate-specific antigen test and transrectal biopsy. Prostate-specific antigen screening has been criticized for overdiagnosis and unnecessary treatment, and transrectal biopsy is an invasive procedure with low sensitivity for diagnosis. We provided a quantitative tool using supervised learning with multiparametric imaging to be able to accurately detect cancer foci and its aggressiveness. A total of 223 specimens from patients who received magnetic resonance imaging (MRI) and magnetic resonance spectroscopy imaging prior to the surgery were studied. Multiparametric imaging included extracting T2-map, apparent diffusion coefficient (ADC) using diffusion-weighted MRI, [Formula: see text] using dynamic contrast-enhanced MRI, and 3-dimensional-MR spectroscopy. A pathologist reviewed all 223 specimens and marked cancerous regions on each and graded them with Gleason scores, which served as the ground truth to validate our prediction model. In cancer aggressiveness prediction, the average area under the receiver operating characteristic curve (AUC) value was 0.73 with 95% confidence interval (0.72-0.74) and the average sensitivity and specificity were 0.72 (0.71-0.73) and 0.73 (0.71-0.75), respectively. For the cancer detection model, the average AUC value was 0.68 (0.66-0.70) and the average sensitivity and specificity were 0.73 (0.70-0.77) and 0.62 (0.60-0.68), respectively. Our method included capability to handle class imbalance using adaptive boosting with random undersampling. In addition, our method was noninvasive and allowed for nonsubjective disease characterization, which provided physician information to make personalized treatment decision. SAGE Publications 2018-07-10 /pmc/articles/PMC6043929/ /pubmed/30013306 http://dx.doi.org/10.1177/1176935118786260 Text en © The Author(s) 2018 http://www.creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research
Kirlik, Gokhan
Gullapalli, Rao
D’Souza, Warren
Md Daud Iqbal, Gazi
Naslund, Michael
Wong, Jade
Papadimitrou, John
Roys, Steve
Mistry, Nilesh
Zhang, Hao
A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title_full A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title_fullStr A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title_full_unstemmed A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title_short A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
title_sort supervised learning tool for prostate cancer foci detection and aggressiveness identification using multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6043929/
https://www.ncbi.nlm.nih.gov/pubmed/30013306
http://dx.doi.org/10.1177/1176935118786260
work_keys_str_mv AT kirlikgokhan asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT gullapallirao asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT dsouzawarren asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT mddaudiqbalgazi asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT naslundmichael asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT wongjade asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT papadimitroujohn asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT royssteve asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT mistrynilesh asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT zhanghao asupervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT kirlikgokhan supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT gullapallirao supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT dsouzawarren supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT mddaudiqbalgazi supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT naslundmichael supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT wongjade supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT papadimitroujohn supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT royssteve supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT mistrynilesh supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging
AT zhanghao supervisedlearningtoolforprostatecancerfocidetectionandaggressivenessidentificationusingmultiparametricmagneticresonanceimagingmagneticresonancespectroscopyimaging