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Mixed Macromolecular Crowding: A Protein and Solvent Perspective

[Image: see text] In the living cell, biomolecules perform their respective functions in the presence of not only one type of macromolecules but rather in the presence of various macromolecules with different shapes and sizes. In this study, we have investigated the effects of five single macromolec...

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Autores principales: Biswas, Saikat, Kundu, Jayanta, Mukherjee, Sanjib K., Chowdhury, Pramit Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044960/
https://www.ncbi.nlm.nih.gov/pubmed/30023892
http://dx.doi.org/10.1021/acsomega.7b01864
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author Biswas, Saikat
Kundu, Jayanta
Mukherjee, Sanjib K.
Chowdhury, Pramit Kumar
author_facet Biswas, Saikat
Kundu, Jayanta
Mukherjee, Sanjib K.
Chowdhury, Pramit Kumar
author_sort Biswas, Saikat
collection PubMed
description [Image: see text] In the living cell, biomolecules perform their respective functions in the presence of not only one type of macromolecules but rather in the presence of various macromolecules with different shapes and sizes. In this study, we have investigated the effects of five single macromolecular crowding agents, Dextran 6, Dextran 40, Dextran 70, Ficoll 70, and PEG 8000 and their binary mixtures on the modulation in the domain separation of human serum albumin using a Förster resonance energy transfer-based approach and the translational mobility of a small fluorescent probe fluorescein isothiocyanate (FITC) using fluorescence correlation spectroscopy (FCS). Our observations suggest that mixed crowding induces greater cooperativity in the domain movement as compared to the components of the mixtures. Thermodynamic analyses of the same provide evidence of crossovers from enthalpy-based interactions to effects dominated by hard-sphere potential. When compared with those obtained for individual crowders, both domain movements and FITC diffusion studies show significant deviations from ideality, with an ideal solution being considered to be that arising from the sum of the contributions of those obtained in the presence of individual crowding agents. Considering the fact that domain movements are local (on the order of a few angstroms) in nature while translational movements span much larger lengthscales, our results imply that the observed deviation from simple additivity exists at several possible levels or lengthscales in such mixtures. Moreover, the nature and the type of deviation not only depend on the identities of the components of the crowder mixtures but are also influenced by the particular face of the serum protein (either the domain I–II or the domain II–III face) that the crowders interact with, thus providing further insights into the possible existence of microheterogeneities in such solutions.
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spelling pubmed-60449602018-07-16 Mixed Macromolecular Crowding: A Protein and Solvent Perspective Biswas, Saikat Kundu, Jayanta Mukherjee, Sanjib K. Chowdhury, Pramit Kumar ACS Omega [Image: see text] In the living cell, biomolecules perform their respective functions in the presence of not only one type of macromolecules but rather in the presence of various macromolecules with different shapes and sizes. In this study, we have investigated the effects of five single macromolecular crowding agents, Dextran 6, Dextran 40, Dextran 70, Ficoll 70, and PEG 8000 and their binary mixtures on the modulation in the domain separation of human serum albumin using a Förster resonance energy transfer-based approach and the translational mobility of a small fluorescent probe fluorescein isothiocyanate (FITC) using fluorescence correlation spectroscopy (FCS). Our observations suggest that mixed crowding induces greater cooperativity in the domain movement as compared to the components of the mixtures. Thermodynamic analyses of the same provide evidence of crossovers from enthalpy-based interactions to effects dominated by hard-sphere potential. When compared with those obtained for individual crowders, both domain movements and FITC diffusion studies show significant deviations from ideality, with an ideal solution being considered to be that arising from the sum of the contributions of those obtained in the presence of individual crowding agents. Considering the fact that domain movements are local (on the order of a few angstroms) in nature while translational movements span much larger lengthscales, our results imply that the observed deviation from simple additivity exists at several possible levels or lengthscales in such mixtures. Moreover, the nature and the type of deviation not only depend on the identities of the components of the crowder mixtures but are also influenced by the particular face of the serum protein (either the domain I–II or the domain II–III face) that the crowders interact with, thus providing further insights into the possible existence of microheterogeneities in such solutions. American Chemical Society 2018-04-19 /pmc/articles/PMC6044960/ /pubmed/30023892 http://dx.doi.org/10.1021/acsomega.7b01864 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Biswas, Saikat
Kundu, Jayanta
Mukherjee, Sanjib K.
Chowdhury, Pramit Kumar
Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title_full Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title_fullStr Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title_full_unstemmed Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title_short Mixed Macromolecular Crowding: A Protein and Solvent Perspective
title_sort mixed macromolecular crowding: a protein and solvent perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044960/
https://www.ncbi.nlm.nih.gov/pubmed/30023892
http://dx.doi.org/10.1021/acsomega.7b01864
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